MD05G1013400.v1.1

alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
2578589 .. 2581759
3171 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1013400.v1.1.491

Sequence Viewer

Length: 1140 bp
ATGTCAACGGCCGGTCAGGTTATCAAGTGCAAAGCCGCGGTGGCATGGGAAGCGGGGAAGCCGCTGTCAATTGAGGAAGTGGAGGTGGCACCACCGCAGAAACATGAAGTTCGCTTGAAGATCCTCTTCACCGCTCTTTGCCACACCGATGTCTACTTCTGGGAAGCCAAAGGACAACAACCACTGTTTCCTCGCATTTTTGGTCATGAAGCTGGAGGAGTTGTGGAAAGCGTAGGCGAGGGTGTAACTGAACTCCAGCCGGGTGACCATGTCCTCCCTGTGTTCACCGGGGAGTGCAAGGAGTGCACGCACTGTAAGTCGGAGGAAAGCAACATGTGTGATCTGCTGAGGATCAACACTGATAGGGGTACTATGCTGAATGATGGCCAGTCCAGGTTCTCCAAGGATGGAAAGCCAATTTATCACTTTGTTGGTACCTCCACCTTCAGTGAGTACACCGTTTGTCATGTTGGCTCCGTTGCTAAGGTCAACCCGGCTGCTCCCCTTGACAAAGTTTGCGTTCTTAGTTGCGGAATATGCACAGGTTTTGGTGCCACTGTGAATGTTGCAAAACCGAAAAAGGGTTCATCTATTGCCATATTTGGATTGGGAGCTGTTGGTCTTGCTGCCGCCGAAGGTGCAAGGATTTCGGGCTGTTCAAGGATCATCGGTGTTGATTTGAATCCCAATCGCTTTGAAGAAGCCAAGAAGTTTGGCGTGAATGAATTTGTGAATCCGAAAGATCATAACAAACCAGTGCAAGAGGTGATTGCTGAGATGACCAATGGTGGAGTTGATAGGAGCGTTGAGTGCACCGGAAGCATTCAGGCGATGATTTCTGCATTTGAATGTGTTCATGATGGTTGGGGTCTTGCGGTACTGGTTGGTGTGCCAAACAAAGATGATGCATTCAAAACCCATCCAATGAATTTCCTGAATGAGAGGACTCTTAAGGGTACCTTCTATGGTAACTACAAGCCCCGCACCGATCTACCAGGTGTTGTCGAGAAGTACATGAACAAGGAGCTGGAACTGGATAAATTTATCACTCACTCGGTCTCATTCGCTGACATCAACAAAGCATTCGACTTGATGCTTTCTGGACAGTCCATCCGGTGCGTCATCCGCATGGAGAATTAA

Protein Analysis

380

Amino Acids

41.17

Weight (kDa)

6.15

Isoelectric Point (pI)

34.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 34 - 163 2.5e-19 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 205 - 336 1.4e-26 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 434, 956
AccB1I GGYRCC 4 cut(s) 88, 434, 551, 956
AccBSI CCGCTC 1 cut(s) 134
AccI GTMKAC 1 cut(s) 153
AccII CGCG 1 cut(s) 38
AclWI GGATC 3 cut(s) 115, 359, 671
AcoI YGGCCR 2 cut(s) 9, 385
AcsI RAATTY 3 cut(s) 725, 928, 1040
AcuI CTGAAG 1 cut(s) 430
AfaI GTAC 6 cut(s) 370, 436, 455, 879, 958, 1013
AfiI CCNNNNNNNGG 1 cut(s) 581
AflII CTTAAG 1 cut(s) 950
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 6 cut(s) 118, 660, 682, 698, 848, 913
AjnI CCWGG 2 cut(s) 392, 994
AluBI AGCT 3 cut(s) 212, 614, 1027
AluI AGCT 3 cut(s) 212, 614, 1027
Alw21I GWGCWC 2 cut(s) 308, 815
Alw26I GTCTC 1 cut(s) 1063
Alw44I GTGCAC 2 cut(s) 304, 811
AlwI GGATC 3 cut(s) 115, 359, 671
AoxI GGCC 2 cut(s) 9, 385
ApaLI GTGCAC 2 cut(s) 304, 811
ApeKI GCWGC 2 cut(s) 497, 626
ApoI RAATTY 3 cut(s) 725, 928, 1040
Asp700I GAANNNNTTC 1 cut(s) 852
Asp718I GGTACC 2 cut(s) 434, 956
AsuC2I CCSGG 3 cut(s) 261, 289, 494
AsuHPI GGTGA 4 cut(s) 121, 275, 277, 778
BaeGI GKGCMC 2 cut(s) 308, 815
BalI TGGCCA 1 cut(s) 387
BanI GGYRCC 4 cut(s) 88, 434, 551, 956
Bbv12I GWGCWC 2 cut(s) 308, 815
BbvCI CCTCAGC 1 cut(s) 347
BbvI GCAGC 2 cut(s) 484, 613
BccI CCATC 5 cut(s) 377, 401, 854, 927, 1118
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 630, 664
BciT130I CCWGG 2 cut(s) 394, 996
BcnI CCSGG 3 cut(s) 261, 289, 494
BcoDI GTCTC 1 cut(s) 1063
BfrI CTTAAG 1 cut(s) 950
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 5 cut(s) 36, 62, 498, 627, 630
BlsI GCNGC 5 cut(s) 37, 63, 499, 628, 631
Bme1390I CCNGG 5 cut(s) 261, 289, 394, 494, 996
BmiI GGNNCC 5 cut(s) 90, 436, 475, 553, 958
BmrFI CCNGG 5 cut(s) 261, 289, 394, 494, 996
BmsI GCATC 2 cut(s) 895, 1083
BpmI CTGGAG 2 cut(s) 234, 239
Bpu10I CCTNAGC 2 cut(s) 347, 483
BpuMI CCSGG 3 cut(s) 261, 289, 494
BsaBI GATNNNNATC 1 cut(s) 681
BsaI GGTCTC 1 cut(s) 1063
BsaJI CCNNGG 3 cut(s) 36, 288, 402
BsaWI WCCGGW 2 cut(s) 815, 1113
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 4 cut(s) 388, 755, 885, 1038
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 2 cut(s) 394, 996
BseDI CCNNGG 3 cut(s) 36, 288, 402
BseGI GGATG 4 cut(s) 412, 919, 1110, 1122
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMII CTCAG 2 cut(s) 338, 765
BseNI ACTGG 4 cut(s) 388, 755, 885, 1038
BseRI GAGGAG 1 cut(s) 231
BseSI GKGCMC 2 cut(s) 308, 815
BseX3I CGGCCG 1 cut(s) 9
BseXI GCAGC 2 cut(s) 484, 613
Bsh1236I CGCG 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 2 cut(s) 11, 387
BshNI GGYRCC 4 cut(s) 88, 434, 551, 956
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 2 cut(s) 308, 815
BsiSI CCGG 6 cut(s) 12, 260, 288, 494, 816, 1114
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 1 cut(s) 1063
BsmI GAATGC 3 cut(s) 822, 908, 1082
BsnI GGCC 2 cut(s) 11, 387
Bso31I GGTCTC 1 cut(s) 1063
Bsp1286I GDGCHC 2 cut(s) 308, 815
Bsp143I GATC 6 cut(s) 120, 340, 351, 663, 742, 988
BspANI GGCC 2 cut(s) 11, 387
BspCNI CTCAG 2 cut(s) 339, 766
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 2 cut(s) 205, 856
BspLI GGNNCC 5 cut(s) 90, 436, 475, 553, 958
BspPI GGATC 3 cut(s) 115, 359, 671
BspT107I GGYRCC 4 cut(s) 88, 434, 551, 956
BspTI CTTAAG 1 cut(s) 950
BspTNI GGTCTC 1 cut(s) 1063
BsrBI CCGCTC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 4 cut(s) 388, 755, 885, 1038
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 3 cut(s) 36, 288, 402
BssMI GATC 6 cut(s) 120, 340, 351, 663, 742, 988
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 2 cut(s) 394, 996
Bst4CI ACNGT 5 cut(s) 186, 314, 460, 559, 1107
Bst6I CTCTTC 1 cut(s) 131
BstAFI CTTAAG 1 cut(s) 950
BstAPI GCANNNNNTGC 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 4 cut(s) 347, 483, 524, 774
BstDSI CCRYGG 1 cut(s) 36
BstEII GGTNACC 1 cut(s) 263
BstF5I GGATG 4 cut(s) 412, 919, 1110, 1122
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 6 cut(s) 123, 343, 354, 666, 745, 991
BstMAI GTCTC 1 cut(s) 1063
BstMBI GATC 6 cut(s) 120, 340, 351, 663, 742, 988
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 8 cut(s) 41, 50, 303, 537, 638, 810, 819, 1125
BstNI CCWGG 2 cut(s) 394, 996
BstNSI RCATGY 1 cut(s) 337
BstPI GGTNACC 1 cut(s) 263
BstSCI CCNGG 5 cut(s) 259, 287, 392, 492, 994
BstSLI GKGCMC 2 cut(s) 308, 815
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 484, 613
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BstZI CGGCCG 1 cut(s) 9
BsuRI GGCC 2 cut(s) 11, 387
BtgI CCRYGG 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 845
BtsCI GGATG 4 cut(s) 412, 919, 1110, 1122
BtsIMutI CAGTG 6 cut(s) 182, 310, 357, 454, 555, 762
Cac8I GCNNGC 1 cut(s) 308
CciI TCATGA 2 cut(s) 205, 856
Cfr10I RCCGGY 1 cut(s) 11
Cfr42I CCGCGG 1 cut(s) 39
CseI GACGC 1 cut(s) 1108
CsiI ACCWGGT 1 cut(s) 994
Csp6I GTAC 6 cut(s) 369, 435, 454, 878, 957, 1012
CviAII CATG 9 cut(s) 45, 104, 206, 269, 334, 467, 857, 1015, 1129
CviQI GTAC 6 cut(s) 369, 435, 454, 878, 957, 1012
DdeI CTNAG 4 cut(s) 347, 483, 524, 774
DpnI GATC 6 cut(s) 122, 342, 353, 665, 744, 990
DpnII GATC 6 cut(s) 120, 340, 351, 663, 742, 988
EaeI YGGCCR 2 cut(s) 9, 385
EagI CGGCCG 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EclXI CGGCCG 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 1063
Eco52I CGGCCG 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 430
Eco91I GGTNACC 1 cut(s) 263
EcoO65I GGTNACC 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 392, 994
EcoT14I CCWWGG 1 cut(s) 402
EcoT22I ATGCAT 1 cut(s) 910
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 9 cut(s) 48, 107, 209, 272, 337, 470, 860, 1018, 1132
FalI AAGNNNNNCTT 4 cut(s) 110, 142, 944, 976
FatI CATG 9 cut(s) 44, 103, 205, 268, 333, 466, 856, 1014, 1128
FauI CCCGC 2 cut(s) 46, 989
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 5 cut(s) 36, 62, 498, 627, 630
FokI GGATG 4 cut(s) 419, 906, 1097, 1109
Fsp4HI GCNGC 5 cut(s) 36, 62, 498, 627, 630
GluI GCNGC 5 cut(s) 36, 62, 498, 627, 630
GsuI CTGGAG 2 cut(s) 234, 239
HaeIII GGCC 2 cut(s) 11, 387
HapII CCGG 6 cut(s) 12, 260, 288, 494, 816, 1114
HgaI GACGC 1 cut(s) 1108
Hin1II CATG 9 cut(s) 48, 107, 209, 272, 337, 470, 860, 1018, 1132
HincII GTYRAC 2 cut(s) 6, 490
HindII GTYRAC 2 cut(s) 6, 490
HinfI GANTC 3 cut(s) 682, 733, 946
HpaII CCGG 6 cut(s) 12, 260, 288, 494, 816, 1114
HphI GGTGA 4 cut(s) 121, 275, 277, 778
Hpy166II GTNNAC 7 cut(s) 6, 154, 285, 306, 456, 490, 813
Hpy188I TCNGA 2 cut(s) 322, 738
Hpy188III TCNNGA 5 cut(s) 206, 857, 934, 1006, 1101
Hpy8I GTNNAC 7 cut(s) 6, 154, 285, 306, 456, 490, 813
HpyAV CCTTC 3 cut(s) 454, 629, 970
HpyCH4III ACNGT 5 cut(s) 186, 314, 460, 559, 1107
HpyF10VI GCNNNNNNNGC 8 cut(s) 41, 50, 303, 537, 638, 810, 819, 1125
HpyF3I CTNAG 4 cut(s) 347, 483, 524, 774
Hsp92II CATG 9 cut(s) 48, 107, 209, 272, 337, 470, 860, 1018, 1132
KpnI GGTACC 2 cut(s) 438, 960
KspI CCGCGG 1 cut(s) 39
Kzo9I GATC 6 cut(s) 120, 340, 351, 663, 742, 988
LmnI GCTCC 5 cut(s) 479, 505, 611, 801, 1024
Lsp1109I GCAGC 2 cut(s) 484, 613
LweI GCATC 2 cut(s) 895, 1083
MabI ACCWGGT 1 cut(s) 994
MaeIII GTNAC 3 cut(s) 244, 263, 968
MalI GATC 6 cut(s) 122, 342, 353, 665, 744, 990
MbiI CCGCTC 1 cut(s) 134
MboI GATC 6 cut(s) 120, 340, 351, 663, 742, 988
MboII GAAGA 3 cut(s) 118, 130, 710
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 2 cut(s) 308, 815
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 6 cut(s) 69, 417, 725, 928, 1040, 1135
MluNI TGGCCA 1 cut(s) 387
MlyI GAGTC 1 cut(s) 940
MmeI TCCRAC 1 cut(s) 300
Mox20I TGGCCA 1 cut(s) 387
Mph1103I ATGCAT 1 cut(s) 910
MroXI GAANNNNTTC 1 cut(s) 852
MscI TGGCCA 1 cut(s) 387
MseI TTAA 2 cut(s) 951, 1138
MslI CAYNNNNRTG 3 cut(s) 147, 847, 1127
Msp20I TGGCCA 1 cut(s) 387
MspA1I CMGCKG 2 cut(s) 38, 64
MspCI CTTAAG 1 cut(s) 950
MspI CCGG 6 cut(s) 12, 260, 288, 494, 816, 1114
MspR9I CCNGG 5 cut(s) 261, 289, 394, 494, 996
MunI CAATTG 1 cut(s) 69
Mva1269I GAATGC 3 cut(s) 822, 908, 1082
MvaI CCWGG 2 cut(s) 394, 996
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 8 cut(s) 41, 50, 303, 537, 638, 810, 819, 1125
NciI CCSGG 3 cut(s) 261, 289, 494
NdeII GATC 6 cut(s) 120, 340, 351, 663, 742, 988
NlaIII CATG 9 cut(s) 48, 107, 209, 272, 337, 470, 860, 1018, 1132
NlaIV GGNNCC 5 cut(s) 90, 436, 475, 553, 958
NmuCI GTSAC 1 cut(s) 263
NsiI ATGCAT 1 cut(s) 910
NspI RCATGY 1 cut(s) 337
PagI TCATGA 2 cut(s) 205, 856
PciI ACATGT 1 cut(s) 333
PctI GAATGC 3 cut(s) 822, 908, 1082
PdmI GAANNNNTTC 1 cut(s) 852
PfeI GAWTC 2 cut(s) 682, 733
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 5 cut(s) 37, 63, 499, 628, 631
PleI GAGTC 1 cut(s) 940
PpsI GAGTC 1 cut(s) 940
PscI ACATGT 1 cut(s) 333
Psp6I CCWGG 2 cut(s) 392, 994
PspEI GGTNACC 1 cut(s) 263
PspGI CCWGG 2 cut(s) 392, 994
PspN4I GGNNCC 5 cut(s) 90, 436, 475, 553, 958
PsuI RGATCY 1 cut(s) 120
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 6 cut(s) 370, 436, 455, 879, 958, 1013
RsaNI GTAC 6 cut(s) 369, 435, 454, 878, 957, 1012
RseI CAYNNNNRTG 3 cut(s) 147, 847, 1127
SacII CCGCGG 1 cut(s) 39
SaqAI TTAA 2 cut(s) 951, 1138
SatI GCNGC 5 cut(s) 36, 62, 498, 627, 630
Sau3AI GATC 6 cut(s) 120, 340, 351, 663, 742, 988
SchI GAGTC 1 cut(s) 940
ScrFI CCNGG 5 cut(s) 261, 289, 394, 494, 996
SduI GDGCHC 2 cut(s) 308, 815
SexAI ACCWGGT 1 cut(s) 994
SfaNI GCATC 2 cut(s) 895, 1083
Sfr303I CCGCGG 1 cut(s) 39
SgrBI CCGCGG 1 cut(s) 39
SmiMI CAYNNNNRTG 3 cut(s) 147, 847, 1127
SmlI CTYRAG 1 cut(s) 950
SmoI CTYRAG 1 cut(s) 950
Sse9I AATT 6 cut(s) 69, 417, 725, 928, 1040, 1135
StyD4I CCNGG 5 cut(s) 259, 287, 392, 492, 994
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 5 cut(s) 186, 314, 460, 559, 1107
TaqI TCGA 2 cut(s) 1005, 1086
TaqII GACCGA 1 cut(s) 1045
TasI AATT 6 cut(s) 69, 417, 725, 928, 1040, 1135
TatI WGTACW 2 cut(s) 453, 1011
TauI GCSGC 3 cut(s) 38, 64, 632
TfiI GAWTC 2 cut(s) 682, 733
Tru1I TTAA 2 cut(s) 951, 1138
Tru9I TTAA 2 cut(s) 951, 1138
TscAI CASTG 6 cut(s) 189, 317, 364, 454, 562, 762
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 2 cut(s) 497, 626
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 7 cut(s) 120, 222, 576, 738, 845, 941, 1031
TspGWI ACGGA 1 cut(s) 466
TspRI CASTG 6 cut(s) 189, 317, 364, 454, 562, 762
Tth111I GACNNNGTC 1 cut(s) 269
Vha464I CTTAAG 1 cut(s) 950
VneI GTGCAC 2 cut(s) 304, 811
XapI RAATTY 3 cut(s) 725, 928, 1040
XceI RCATGY 1 cut(s) 337
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XmiI GTMKAC 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 852
Zsp2I ATGCAT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.