Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000815

Physical Location & Seq

Genomic Coordinates Forward (+)

987889 .. 989289

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGTCATGAATAATAGTTGCTTATACATTTGCATTTGGACTGCGGTGGCATGGGAAGCGGGGAAGCCGCTGTCAATTGAGGAAGTGGAGGTGGCACCACCGCAGAAACATGAAGTTCGCTTGAAGATCCTCTTCACCGCTCTTTGCCACACCGATGTCTACTTCTGGGAAGCCAAAGGACAACAACCACTGTTTCCTCGCATTTTCGGTCATGAAGCTGGAGGAGTTGTGGAAAGCGTAGGCGAGGGTGTAACTGAACTCCAGCCGGGTGACCATGTCCTCCCTGTGTTCACTGGGGAGTGCAAGGAGTGCACGCACTGTAAGTCGGAGGAAAGCAACATGTGTGATCTGCTGAGGATCAATACTGATAGGGGTACTATGTTGAATGATGGCCAGTCCAGGTTCTCCAAGGATGGAAAGCCAATTTATCACTTTGTTGGTACCTCCACCTTCAGTGAGTACACAGTTTGTCATGTTGGTTCCCTTGCTAAGGTCAACCCGGCTGCTCCCCTTGACAAAGTTTGCGTTCTTAGTTGCGGAATATGCACAGGTCTTGGCGCCACTGTGAATGTTGCAAAACCGAAAAAGGGTTCATCTATTGCCATTTTTGGATTGGGAGCTGTTGGTCTTGCTGCCGCCGAAGGTGCAAGGATTTCGGGCTGTTCAAGGATCGATCGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

228

Amino Acids

24.36

Weight (kDa)

6.16

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	36 - 165	8.6e-20	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77120
fragaria_vesca	FvH4_2g14750 FvH4_2g14750 FvH4_2g14760 FvH4_2g14760
malus_domestica	MD05G1013200.v1.1 MD05G1013400.v1.1 MD05G1179800.v1.1 MD05G1180800.v1.1 MD08G1068100.v1.1 MD09G1211500.v1.1 MD10G1013800.v1.1 MD10G1013900.v1.1 MD10G1014200.v1.1 MD10G1014500.v1.1 MD11G1004800.v1.1
prunus_persica	Prupe.8G018100_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018600_v2.0.a1 Prupe.8G207100_v2.0.a1 Prupe.8G207400_v2.0.a1
pyrus_communis	pycom05g00790 pycom05g16630 pycom10g00850 pycom10g00860 pycom10g00890
rosa_chinensis	RchiOBHm_Chr1g0331561 RchiOBHm_Chr6g0277181 RchiOBHm_Chr6g0277231 RchiOBHm_Chr6g0277261 RchiOBHm_Chr6g0277281 RchiOBHm_Chr6g0277311 RchiOBHm_Chr6g0277321
rosa_laevigata	RLG00000013310 RLG00000013311 RLG00000013312 RLG00000013313 RLG00000013319 RLG00000013325
rosa_multiflora	Rmu_co8243651.1_g000001 Rmu_sc0000030.1_g000028 Rmu_sc0000030.1_g000031 Rmu_sc0000030.1_g000035
rosa_roxburghii	Rroxscaffold_4G00319070 Rroxscaffold_7G00191450 Rroxscaffold_7G00191460 Rroxscaffold_7G00191470 Rroxscaffold_7G00191540
rosa_rugosa	Rorug01G0094000 Rorug01G0094100 Rorug06G0107000 Rorug06G0107100
rosa_samantha	Rh1BG090100 Rh1CG113500 Rh6BG221900 Rh6DG214200 Rh6DG214400 Rh6DG214700 Rh6DG214900
rosa_wichuraiana	Rw6G019010 Rw6G019020 Rw6G019030 Rw6G019040 Rw6G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	440
AccB1I	GGYRCC	3 cut(s)	94, 440, 557
AccBSI	CCGCTC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	7 cut(s)	44, 59, 68, 101, 138, 537, 636
AclWI	GGATC	3 cut(s)	121, 365, 677
AcoI	YGGCCR	1 cut(s)	391
AcuI	CTGAAG	1 cut(s)	436
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	3 cut(s)	376, 442, 461
AfiI	CCNNNNNNNGG	2 cut(s)	490, 587
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	3 cut(s)	124, 385, 666
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	2 cut(s)	218, 620
AluI	AGCT	2 cut(s)	218, 620
Alw21I	GWGCWC	1 cut(s)	314
Alw44I	GTGCAC	1 cut(s)	310
AlwI	GGATC	3 cut(s)	121, 365, 677
AoxI	GGCC	1 cut(s)	391
ApaLI	GTGCAC	1 cut(s)	310
ApeKI	GCWGC	2 cut(s)	503, 632
Asp718I	GGTACC	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	560
AsuC2I	CCSGG	2 cut(s)	267, 500
AsuHPI	GGTGA	2 cut(s)	127, 281
BaeGI	GKGCMC	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	393
BanI	GGYRCC	3 cut(s)	94, 440, 557
Bbv12I	GWGCWC	1 cut(s)	314
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	2 cut(s)	490, 619
BccI	CCATC	2 cut(s)	383, 407
BcgI	CGANNNNNNTGC	2 cut(s)	636, 670
BciT130I	CCWGG	1 cut(s)	400
BcnI	CCSGG	2 cut(s)	267, 500
BfoI	RGCGCY	1 cut(s)	561
BisI	GCNGC	4 cut(s)	68, 504, 633, 636
BlsI	GCNGC	4 cut(s)	69, 505, 634, 637
Bme1390I	CCNGG	3 cut(s)	267, 400, 500
BmiI	GGNNCC	4 cut(s)	96, 442, 481, 559
BmrFI	CCNGG	3 cut(s)	267, 400, 500
BmrI	ACTGGG	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	303
BpmI	CTGGAG	2 cut(s)	240, 245
Bpu10I	CCTNAGC	2 cut(s)	353, 489
BpuMI	CCSGG	2 cut(s)	267, 500
Bsa29I	ATCGAT	1 cut(s)	672
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	408
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 587
Bse1I	ACTGG	2 cut(s)	298, 394
BseBI	CCWGG	1 cut(s)	400
BseCI	ATCGAT	1 cut(s)	672
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	490, 587
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	2 cut(s)	298, 394
BseRI	GAGGAG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	490, 619
Bsh1285I	CGRYCG	1 cut(s)	676
BshFI	GGCC	1 cut(s)	393
BshNI	GGYRCC	3 cut(s)	94, 440, 557
BshVI	ATCGAT	1 cut(s)	672
BsiEI	CGRYCG	1 cut(s)	676
BsiHKAI	GWGCWC	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	266, 500
BslI	CCNNNNNNNGG	2 cut(s)	490, 587
BsnI	GGCC	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	5 cut(s)	126, 346, 357, 669, 673
BspACI	CCGC	7 cut(s)	44, 59, 68, 101, 138, 537, 636
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	1 cut(s)	345
BspDI	ATCGAT	1 cut(s)	672
BspHI	TCATGA	2 cut(s)	6, 211
BspLI	GGNNCC	4 cut(s)	96, 442, 481, 559
BspPI	GGATC	3 cut(s)	121, 365, 677
BspT107I	GGYRCC	3 cut(s)	94, 440, 557
BsrBI	CCGCTC	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	298, 394
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	5 cut(s)	126, 346, 357, 669, 673
BssNI	GRCGYC	1 cut(s)	558
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	4 cut(s)	192, 320, 466, 565
Bst6I	CTCTTC	1 cut(s)	137
BstACI	GRCGYC	1 cut(s)	558
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	3 cut(s)	353, 489, 530
BstEII	GGTNACC	1 cut(s)	269
BstENI	CCTNNNNNAGG	1 cut(s)	488
BstF5I	GGATG	1 cut(s)	418
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	5 cut(s)	129, 349, 360, 672, 676
BstMBI	GATC	5 cut(s)	126, 346, 357, 669, 673
BstMCI	CGRYCG	1 cut(s)	676
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 309, 543, 644
BstNI	CCWGG	1 cut(s)	400
BstNSI	RCATGY	1 cut(s)	343
BstPI	GGTNACC	1 cut(s)	269
BstSCI	CCNGG	3 cut(s)	265, 398, 498
BstSLI	GKGCMC	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	490, 619
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
Bsu15I	ATCGAT	1 cut(s)	672
BsuRI	GGCC	1 cut(s)	393
BsuTUI	ATCGAT	1 cut(s)	672
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	5 cut(s)	188, 291, 316, 460, 561
Cac8I	GCNNGC	1 cut(s)	314
CciI	TCATGA	2 cut(s)	6, 211
CfoI	GCGC	1 cut(s)	560
ClaI	ATCGAT	1 cut(s)	672
Csp6I	GTAC	3 cut(s)	375, 441, 460
CviAII	CATG	7 cut(s)	7, 51, 110, 212, 275, 340, 473
CviJI	RGCY	9 cut(s)	67, 173, 218, 265, 393, 421, 503, 620, 660
CviKI_1	RGCY	9 cut(s)	67, 173, 218, 265, 393, 421, 503, 620, 660
CviQI	GTAC	3 cut(s)	375, 441, 460
DdeI	CTNAG	3 cut(s)	353, 489, 530
DinI	GGCGCC	1 cut(s)	559
DpnI	GATC	5 cut(s)	128, 348, 359, 671, 675
DpnII	GATC	5 cut(s)	126, 346, 357, 669, 673
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	436
Eco91I	GGTNACC	1 cut(s)	269
EcoNI	CCTNNNNNAGG	1 cut(s)	488
EcoO65I	GGTNACC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	408
EgeI	GGCGCC	1 cut(s)	559
EheI	GGCGCC	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	7 cut(s)	10, 54, 113, 215, 278, 343, 476
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FatI	CATG	7 cut(s)	6, 50, 109, 211, 274, 339, 472
FauI	CCCGC	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	68, 504, 633, 636
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	4 cut(s)	68, 504, 633, 636
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	4 cut(s)	68, 504, 633, 636
GsuI	CTGGAG	2 cut(s)	240, 245
HaeII	RGCGCY	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	2 cut(s)	266, 500
HhaI	GCGC	1 cut(s)	560
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	7 cut(s)	10, 54, 113, 215, 278, 343, 476
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HpaII	CCGG	2 cut(s)	266, 500
HphI	GGTGA	2 cut(s)	127, 281
Hpy166II	GTNNAC	5 cut(s)	160, 291, 312, 462, 496
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	2 cut(s)	7, 212
Hpy8I	GTNNAC	5 cut(s)	160, 291, 312, 462, 496
HpyAV	CCTTC	2 cut(s)	460, 635
HpyCH4III	ACNGT	4 cut(s)	192, 320, 466, 565
HpyCH4V	TGCA	6 cut(s)	33, 303, 312, 546, 575, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 309, 543, 644
HpyF3I	CTNAG	3 cut(s)	353, 489, 530
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	7 cut(s)	10, 54, 113, 215, 278, 343, 476
HspAI	GCGC	1 cut(s)	558
KasI	GGCGCC	1 cut(s)	557
KpnI	GGTACC	1 cut(s)	444
Kzo9I	GATC	5 cut(s)	126, 346, 357, 669, 673
LmnI	GCTCC	2 cut(s)	511, 617
Lsp1109I	GCAGC	2 cut(s)	490, 619
MaeIII	GTNAC	2 cut(s)	250, 269
MalI	GATC	5 cut(s)	128, 348, 359, 671, 675
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	5 cut(s)	126, 346, 357, 669, 673
MboII	GAAGA	2 cut(s)	124, 136
MfeI	CAATTG	1 cut(s)	75
MflI	RGATCY	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	314
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	2 cut(s)	75, 423
MluNI	TGGCCA	1 cut(s)	393
Mly113I	GGCGCC	1 cut(s)	558
MmeI	TCCRAC	1 cut(s)	306
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
MslI	CAYNNNNRTG	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	2 cut(s)	266, 500
MspR9I	CCNGG	3 cut(s)	267, 400, 500
MunI	CAATTG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	4 cut(s)	56, 309, 543, 644
NarI	GGCGCC	1 cut(s)	558
NciI	CCSGG	2 cut(s)	267, 500
NdeII	GATC	5 cut(s)	126, 346, 357, 669, 673
NlaIII	CATG	7 cut(s)	10, 54, 113, 215, 278, 343, 476
NlaIV	GGNNCC	4 cut(s)	96, 442, 481, 559
NmuCI	GTSAC	1 cut(s)	269
NspI	RCATGY	1 cut(s)	343
PagI	TCATGA	2 cut(s)	6, 211
PciI	ACATGT	1 cut(s)	339
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	69, 505, 634, 637
Ple19I	CGATCG	1 cut(s)	676
PluTI	GGCGCC	1 cut(s)	561
PscI	ACATGT	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	398
PspEI	GGTNACC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	4 cut(s)	96, 442, 481, 559
PsuI	RGATCY	1 cut(s)	126
PsyI	GACNNNGTC	1 cut(s)	275
PvuI	CGATCG	1 cut(s)	676
RsaI	GTAC	3 cut(s)	376, 442, 461
RsaNI	GTAC	3 cut(s)	375, 441, 460
RseI	CAYNNNNRTG	1 cut(s)	153
SatI	GCNGC	4 cut(s)	68, 504, 633, 636
Sau3AI	GATC	5 cut(s)	126, 346, 357, 669, 673
ScrFI	CCNGG	3 cut(s)	267, 400, 500
SduI	GDGCHC	1 cut(s)	314
SetI	ASST	9 cut(s)	93, 220, 404, 446, 452, 495, 553, 622, 646
SfoI	GGCGCC	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	75, 423
SsiI	CCGC	7 cut(s)	44, 59, 68, 101, 138, 537, 636
SspDI	GGCGCC	1 cut(s)	557
StyD4I	CCNGG	3 cut(s)	265, 398, 498
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	4 cut(s)	192, 320, 466, 565
TaqI	TCGA	1 cut(s)	672
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	75, 423
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	2 cut(s)	70, 638
TscAI	CASTG	5 cut(s)	195, 298, 323, 460, 568
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	2 cut(s)	503, 632
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	4 cut(s)	23, 126, 228, 582
TspRI	CASTG	5 cut(s)	195, 298, 323, 460, 568
Tth111I	GACNNNGTC	1 cut(s)	275
VneI	GTGCAC	1 cut(s)	310
XagI	CCTNNNNNAGG	1 cut(s)	488
XceI	RCATGY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	610
XmiI	GTMKAC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.