AT1G77120

alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
28975255 .. 28977417
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77120.1

Sequence Viewer

Length: 1140 bp
ATGTCTACCACCGGACAGATTATTCGATGCAAAGCTGCTGTGGCATGGGAAGCCGGAAAGCCACTGGTGATCGAGGAAGTGGAGGTTGCTCCACCGCAGAAACACGAAGTTCGTATCAAGATTCTCTTCACTTCTCTCTGTCACACCGATGTTTACTTCTGGGAAGCTAAGGGACAAACACCGTTGTTTCCACGTATCTTCGGCCATGAAGCTGGAGGGATTGTTGAGAGTGTTGGAGAAGGAGTGACTGATCTTCAGCCAGGAGATCATGTGTTGCCGATCTTTACCGGAGAATGTGGGGAGTGTCGTCATTGCCACTCGGAGGAATCAAACATGTGTGATCTTCTCAGGATCAACACCGAGCGAGGAGGGATGATTCACGATGGTGAATCAAGATTCTCCATTAATGGCAAACCAATTTACCATTTCCTTGGGACTTCCACGTTCAGTGAGTACACAGTGGTTCACTCTGGTCAGGTTGCTAAGATCAATCCGGATGCTCCTCTTGACAAGGTCTGTATTGTCAGTTGTGGTTTGTCTACTGGGTTAGGAGCAACTTTGAATGTGGCTAAACCCAAGAAAGGTCAAAGTGTTGCCATTTTTGGTCTTGGTGCTGTTGGTTTAGGCGCTGCAGAAGGTGCTAGAATCGCTGGTGCTTCTAGGATCATCGGTGTTGATTTTAACTCTAAAAGATTCGACCAAGCTAAGGAATTCGGTGTGACCGAGTGTGTGAACCCGAAAGACCATGACAAGCCAATTCAACAGGTGATCGCTGAGATGACGGATGGTGGGGTGGACAGGAGTGTGGAATGCACCGGAAGCGTTCAGGCCATGATTCAAGCATTTGAATGTGTCCACGATGGCTGGGGTGTTGCAGTGCTGGTGGGTGTGCCAAGCAAAGACGATGCCTTCAAGACTCATCCGATGAATTTCTTGAATGAGAGGACTCTTAAGGGTACTTTCTTCGGGAACTACAAACCCAAAACTGACATTCCCGGGGTTGTGGAAAAGTACATGAACAAGGAGCTGGAGCTTGAGAAATTCATCACTCACACAGTGCCATTCTCGGAAATCAACAAGGCCTTTGATTACATGCTGAAGGGAGAGAGTATTCGTTGCATCATCACCATGGGTGCTTGA

Protein Analysis

379

Amino Acids

41.18

Weight (kDa)

5.83

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 34 - 164 1.4e-21 Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C PF16912 196 - 364 3.4e-06 Glucose dehydrogenase C-terminus
ADH_zinc_N PF00107 205 - 336 5.1e-27 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 5, 539
AccIII TCCGGA 1 cut(s) 493
AciI CCGC 1 cut(s) 95
AclWI GGATC 2 cut(s) 359, 671
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 3 cut(s) 710, 928, 1040
AcuI CTGAAG 2 cut(s) 239, 1118
AdeI CACNNNGTG 1 cut(s) 1057
AfaI GTAC 3 cut(s) 455, 958, 1013
AfiI CCNNNNNNNGG 3 cut(s) 322, 581, 706
AflII CTTAAG 1 cut(s) 950
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 6 cut(s) 562, 761, 839, 848, 913, 937
AjnI CCWGG 1 cut(s) 259
AleI CACNNNNGTG 1 cut(s) 384
AluBI AGCT 6 cut(s) 35, 167, 212, 704, 1027, 1033
AluI AGCT 6 cut(s) 35, 167, 212, 704, 1027, 1033
AlwI GGATC 2 cut(s) 359, 671
Ama87I CYCGRG 1 cut(s) 995
Aor13HI TCCGGA 1 cut(s) 493
AoxI GGCC 3 cut(s) 202, 828, 1080
ApeKI GCWGC 2 cut(s) 35, 629
ApoI RAATTY 3 cut(s) 710, 928, 1040
ArsI GACNNNNNNTTYG 1 cut(s) 38
AseI ATTAAT 1 cut(s) 405
AspLEI GCGC 1 cut(s) 629
AsuC2I CCSGG 2 cut(s) 996, 997
AsuHPI GGTGA 4 cut(s) 79, 398, 778, 1117
AvaI CYCGRG 1 cut(s) 995
BbvI GCAGC 2 cut(s) 22, 616
BccI CCATC 3 cut(s) 377, 779, 854
BciT130I CCWGG 1 cut(s) 261
BcnI CCSGG 2 cut(s) 996, 997
BfaI CTAG 2 cut(s) 642, 660
BfmI CTRYAG 1 cut(s) 630
BfoI RGCGCY 1 cut(s) 630
BfrI CTTAAG 1 cut(s) 950
BisI GCNGC 2 cut(s) 36, 630
BlsI GCNGC 2 cut(s) 37, 631
Bme1390I CCNGG 3 cut(s) 261, 996, 997
BmeT110I CYCGRG 1 cut(s) 995
BmrFI CCNGG 3 cut(s) 261, 996, 997
BmrI ACTGGG 1 cut(s) 552
BmsI GCATC 4 cut(s) 17, 487, 895, 1128
BmuI ACTGGG 1 cut(s) 552
BpmI CTGGAG 2 cut(s) 234, 1049
Bpu10I CCTNAGC 2 cut(s) 168, 705
BpuEI CTTGAG 1 cut(s) 1055
BpuMI CCSGG 2 cut(s) 996, 997
BsaAI YACGTR 1 cut(s) 194
BsaJI CCNNGG 4 cut(s) 430, 995, 996, 1128
BsaWI WCCGGW 4 cut(s) 11, 287, 493, 815
BsaXI ACNNNNNCTCC 6 cut(s) 207, 228, 237, 255, 258, 285
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 581, 706
Bse1I ACTGG 2 cut(s) 69, 547
Bse3DI GCAATG 1 cut(s) 310
BseAI TCCGGA 1 cut(s) 493
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 4 cut(s) 430, 995, 996, 1128
BseGI GGATG 4 cut(s) 378, 502, 790, 919
BseLI CCNNNNNNNGG 3 cut(s) 322, 581, 706
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 361, 765
BseNI ACTGG 2 cut(s) 69, 547
BseRI GAGGAG 2 cut(s) 381, 492
BseXI GCAGC 2 cut(s) 22, 616
BseYI CCCAGC 1 cut(s) 864
BshFI GGCC 3 cut(s) 204, 830, 1082
BsiHKCI CYCGRG 1 cut(s) 995
BsiSI CCGG 6 cut(s) 12, 54, 288, 494, 816, 996
BslFI GGGAC 2 cut(s) 186, 448
BslI CCNNNNNNNGG 3 cut(s) 322, 581, 706
BsmFI GGGAC 2 cut(s) 186, 448
BsmI GAATGC 1 cut(s) 815
BsnI GGCC 3 cut(s) 204, 830, 1082
BsoBI CYCGRG 1 cut(s) 995
Bsp13I TCCGGA 1 cut(s) 493
Bsp143I GATC 9 cut(s) 69, 250, 265, 279, 340, 351, 486, 663, 768
Bsp19I CCATGG 1 cut(s) 1128
BspACI CCGC 1 cut(s) 95
BspANI GGCC 3 cut(s) 204, 830, 1082
BspCNI CTCAG 2 cut(s) 360, 766
BspEI TCCGGA 1 cut(s) 493
BspMAI CTGCAG 1 cut(s) 634
BspPI GGATC 2 cut(s) 359, 671
BspTI CTTAAG 1 cut(s) 950
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 2 cut(s) 69, 547
BssECI CCNNGG 4 cut(s) 430, 995, 996, 1128
BssMI GATC 9 cut(s) 69, 250, 265, 279, 340, 351, 486, 663, 768
BssT1I CCWWGG 2 cut(s) 430, 1128
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 3 cut(s) 183, 460, 1057
Bst6I CTCTTC 1 cut(s) 131
BstAFI CTTAAG 1 cut(s) 950
BstAPI GCANNNNNTGC 1 cut(s) 638
BstBAI YACGTR 1 cut(s) 194
BstDEI CTNAG 5 cut(s) 168, 347, 483, 705, 774
BstDSI CCRYGG 1 cut(s) 1128
BstF5I GGATG 4 cut(s) 378, 502, 790, 919
BstH2I RGCGCY 1 cut(s) 630
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 9 cut(s) 72, 253, 268, 282, 343, 354, 489, 666, 771
BstMBI GATC 9 cut(s) 69, 250, 265, 279, 340, 351, 486, 663, 768
BstMWI GCNNNNNNNGC 5 cut(s) 41, 50, 638, 647, 819
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 2 cut(s) 337, 1096
BstSCI CCNGG 3 cut(s) 259, 994, 995
BstSFI CTRYAG 1 cut(s) 630
BstV1I GCAGC 2 cut(s) 22, 616
BstXI CCANNNNNNTGG 2 cut(s) 212, 431
BsuRI GGCC 3 cut(s) 204, 830, 1082
BtgI CCRYGG 1 cut(s) 1128
BtsCI GGATG 4 cut(s) 378, 502, 790, 919
BtsI GCAGTG 1 cut(s) 882
BtsIMutI CAGTG 5 cut(s) 62, 454, 465, 882, 1062
CfoI GCGC 1 cut(s) 629
Cfr9I CCCGGG 1 cut(s) 995
Csp6I GTAC 3 cut(s) 454, 957, 1012
CviAII CATG 9 cut(s) 45, 206, 269, 334, 746, 832, 1015, 1093, 1129
CviQI GTAC 3 cut(s) 454, 957, 1012
DdeI CTNAG 5 cut(s) 168, 347, 483, 705, 774
DpnI GATC 9 cut(s) 71, 252, 267, 281, 342, 353, 488, 665, 770
DpnII GATC 9 cut(s) 69, 250, 265, 279, 340, 351, 486, 663, 768
DraIII CACNNNGTG 1 cut(s) 1057
EaeI YGGCCR 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco130I CCWWGG 2 cut(s) 430, 1128
Eco147I AGGCCT 1 cut(s) 1082
Eco57I CTGAAG 2 cut(s) 239, 1118
Eco88I CYCGRG 1 cut(s) 995
EcoRI GAATTC 1 cut(s) 710
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 2 cut(s) 430, 1128
ErhI CCWWGG 2 cut(s) 430, 1128
FaeI CATG 9 cut(s) 48, 209, 272, 337, 749, 835, 1018, 1096, 1132
FaiI YATR 9 cut(s) 46, 207, 270, 335, 747, 833, 1016, 1094, 1130
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 2 cut(s) 186, 448
FatI CATG 9 cut(s) 44, 205, 268, 333, 745, 831, 1014, 1092, 1128
FblI GTMKAC 2 cut(s) 5, 539
Fnu4HI GCNGC 2 cut(s) 36, 630
FokI GGATG 4 cut(s) 385, 509, 797, 906
Fsp4HI GCNGC 2 cut(s) 36, 630
FspBI CTAG 2 cut(s) 642, 660
GlaI GCGC 1 cut(s) 628
GluI GCNGC 2 cut(s) 36, 630
GsaI CCCAGC 1 cut(s) 868
GsuI CTGGAG 2 cut(s) 234, 1049
HaeII RGCGCY 1 cut(s) 630
HaeIII GGCC 3 cut(s) 204, 830, 1082
HapII CCGG 6 cut(s) 12, 54, 288, 494, 816, 996
HhaI GCGC 1 cut(s) 629
Hin1II CATG 9 cut(s) 48, 209, 272, 337, 749, 835, 1018, 1096, 1132
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HpaII CCGG 6 cut(s) 12, 54, 288, 494, 816, 996
HphI GGTGA 4 cut(s) 79, 398, 778, 1117
Hpy166II GTNNAC 8 cut(s) 6, 154, 456, 466, 540, 733, 796, 856
Hpy188I TCNGA 3 cut(s) 322, 924, 1069
Hpy188III TCNNGA 9 cut(s) 118, 349, 380, 393, 494, 506, 913, 934, 967
Hpy8I GTNNAC 8 cut(s) 6, 154, 456, 466, 540, 733, 796, 856
HpyAV CCTTC 4 cut(s) 233, 629, 919, 1093
HpyCH4III ACNGT 3 cut(s) 183, 460, 1057
HpyCH4IV ACGT 2 cut(s) 193, 443
HpyCH4V TGCA 5 cut(s) 30, 632, 813, 875, 1119
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 50, 638, 647, 819
HpyF3I CTNAG 5 cut(s) 168, 347, 483, 705, 774
HpySE526I ACGT 2 cut(s) 193, 443
Hsp92II CATG 9 cut(s) 48, 209, 272, 337, 749, 835, 1018, 1096, 1132
HspAI GCGC 1 cut(s) 627
Kpn2I TCCGGA 1 cut(s) 493
Kzo9I GATC 9 cut(s) 69, 250, 265, 279, 340, 351, 486, 663, 768
LmnI GCTCC 5 cut(s) 94, 505, 551, 1024, 1030
Lsp1109I GCAGC 2 cut(s) 22, 616
LweI GCATC 4 cut(s) 17, 487, 895, 1128
MaeI CTAG 2 cut(s) 642, 660
MaeII ACGT 2 cut(s) 193, 443
MaeIII GTNAC 3 cut(s) 140, 244, 718
MalI GATC 9 cut(s) 71, 252, 267, 281, 342, 353, 488, 665, 770
MboI GATC 9 cut(s) 69, 250, 265, 279, 340, 351, 486, 663, 768
MboII GAAGA 5 cut(s) 118, 190, 245, 335, 955
MluCI AATT 5 cut(s) 417, 710, 756, 928, 1040
MlyI GAGTC 2 cut(s) 910, 940
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 8 cut(s) 67, 76, 209, 316, 359, 362, 513, 936
MroI TCCGGA 1 cut(s) 493
MseI TTAA 3 cut(s) 405, 681, 951
MslI CAYNNNNRTG 4 cut(s) 147, 384, 847, 1127
MspCI CTTAAG 1 cut(s) 950
MspI CCGG 6 cut(s) 12, 54, 288, 494, 816, 996
MspR9I CCNGG 3 cut(s) 261, 996, 997
Mva1269I GAATGC 1 cut(s) 815
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 5 cut(s) 41, 50, 638, 647, 819
NciI CCSGG 2 cut(s) 996, 997
NcoI CCATGG 1 cut(s) 1128
NdeII GATC 9 cut(s) 69, 250, 265, 279, 340, 351, 486, 663, 768
NlaIII CATG 9 cut(s) 48, 209, 272, 337, 749, 835, 1018, 1096, 1132
NmuCI GTSAC 3 cut(s) 140, 244, 718
NspI RCATGY 2 cut(s) 337, 1096
OliI CACNNNNGTG 1 cut(s) 384
PceI AGGCCT 1 cut(s) 1082
PciI ACATGT 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 720
PctI GAATGC 1 cut(s) 815
PfeI GAWTC 8 cut(s) 121, 326, 376, 389, 396, 645, 693, 835
PflFI GACNNNGTC 1 cut(s) 512
PkrI GCNGC 2 cut(s) 37, 631
PleI GAGTC 2 cut(s) 910, 940
PpsI GAGTC 2 cut(s) 910, 940
Ppu21I YACGTR 1 cut(s) 194
PscI ACATGT 1 cut(s) 333
PshBI ATTAAT 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 864
PspGI CCWGG 1 cut(s) 259
PstI CTGCAG 1 cut(s) 634
PsyI GACNNNGTC 1 cut(s) 512
RsaI GTAC 3 cut(s) 455, 958, 1013
RsaNI GTAC 3 cut(s) 454, 957, 1012
RseI CAYNNNNRTG 4 cut(s) 147, 384, 847, 1127
SaqAI TTAA 3 cut(s) 405, 681, 951
SatI GCNGC 2 cut(s) 36, 630
Sau3AI GATC 9 cut(s) 69, 250, 265, 279, 340, 351, 486, 663, 768
SchI GAGTC 2 cut(s) 910, 940
ScrFI CCNGG 3 cut(s) 261, 996, 997
SfaNI GCATC 4 cut(s) 17, 487, 895, 1128
SfcI CTRYAG 1 cut(s) 630
SmaI CCCGGG 1 cut(s) 997
SmiMI CAYNNNNRTG 4 cut(s) 147, 384, 847, 1127
SmlI CTYRAG 2 cut(s) 950, 1034
SmoI CTYRAG 2 cut(s) 950, 1034
Sse9I AATT 5 cut(s) 417, 710, 756, 928, 1040
SseBI AGGCCT 1 cut(s) 1082
SsiI CCGC 1 cut(s) 95
SspMI CTAG 2 cut(s) 642, 660
StuI AGGCCT 1 cut(s) 1082
StyD4I CCNGG 3 cut(s) 259, 994, 995
StyI CCWWGG 2 cut(s) 430, 1128
TaaI ACNGT 3 cut(s) 183, 460, 1057
TaiI ACGT 2 cut(s) 196, 446
TaqI TCGA 3 cut(s) 25, 72, 696
TaqII GACCGA 1 cut(s) 737
TasI AATT 5 cut(s) 417, 710, 756, 928, 1040
TatI WGTACW 2 cut(s) 453, 1011
TfiI GAWTC 8 cut(s) 121, 326, 376, 389, 396, 645, 693, 835
Tru1I TTAA 3 cut(s) 405, 681, 951
Tru9I TTAA 3 cut(s) 405, 681, 951
TscAI CASTG 5 cut(s) 69, 454, 465, 882, 1062
TseFI GTSAC 3 cut(s) 140, 244, 718
TseI GCWGC 2 cut(s) 35, 629
Tsp45I GTSAC 3 cut(s) 140, 244, 718
TspDTI ATGAA 4 cut(s) 222, 941, 1031, 1033
TspGWI ACGGA 1 cut(s) 797
TspMI CCCGGG 1 cut(s) 995
TspRI CASTG 5 cut(s) 69, 454, 465, 882, 1062
Tth111I GACNNNGTC 1 cut(s) 512
Vha464I CTTAAG 1 cut(s) 950
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 3 cut(s) 710, 928, 1040
XceI RCATGY 2 cut(s) 337, 1096
XmaI CCCGGG 1 cut(s) 995
XmiI GTMKAC 2 cut(s) 5, 539
XspI CTAG 2 cut(s) 642, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.