Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000815

Physical Location & Seq

Genomic Coordinates Reverse (-)

39704659 .. 39706236

Gene Structure 1578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24870

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTGTGATCTCCTGAGGATTAATACCGACAGGGGTACTGTGATCAATGACGGCCAGACCCGGTTTTCCAAGGATGGAAAGCCAATTTATCACTTTGTTGGTACCTCTACATTCAGTGAATACACTGTTTCACATGTTAGTTCCGTTGTGAAGATCAACCCTGTAACGCCTCTTGACAAAGTTTGTGTTCTTAGTTGCGGAATTTGTACAGGTTTTGGTGCAACTGTAAATGTTGCAAAGCCGAAAAAGGGTTCATCTGTTGCCATTTTCAGATTGGGTGTTGTTGGTCTTGCTGTTGCGGAAGGTGCAAGGGTTTCTGGGGCTTCAAGGATCATTGGAAAGTTTGGGGTGAATGAATATGTGAATCCAAGAGATCATAACAAACCTGTTCAAGAGGTGATTGCTCAGATGACCAATGGTGGAGTTGATCGGAGTGTTGAGTGTACTGGTAGCATCCAGGCTATGATCTCTGCCTTTGAATGTGTTCATAATGGTTGGGCGGTTGTTGTACTTGTTGGAGTGCCAAACAAAGACGATGCGTTCAAAACCCAACCAGTGAACTTCTTGAATGAGAAGACTCTTAAGGGAACTTTCTATGGTAACTACAAGCCCCGCACTGATCTACCTGGTGTTGTGGAGAAGTACATGAACAAGGAGTTAGAATTGAACAAATTTATCACTCACTCTGTTTCTTTCTCCGAGATCAATAAGGCATTCGATTACATGGTGGCAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

245

Amino Acids

26.56

Weight (kDa)

8.83

Isoelectric Point (pI)

28.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	94 - 213	3.7e-15	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77120
fragaria_vesca	FvH4_2g14750 FvH4_2g14750 FvH4_2g14760 FvH4_2g14760
malus_domestica	MD05G1013200.v1.1 MD05G1013400.v1.1 MD05G1179800.v1.1 MD05G1180800.v1.1 MD08G1068100.v1.1 MD09G1211500.v1.1 MD10G1013800.v1.1 MD10G1013900.v1.1 MD10G1014200.v1.1 MD10G1014500.v1.1 MD11G1004800.v1.1
prunus_persica	Prupe.8G018100_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018600_v2.0.a1 Prupe.8G207100_v2.0.a1 Prupe.8G207400_v2.0.a1
pyrus_communis	pycom05g00790 pycom05g16630 pycom10g00850 pycom10g00860 pycom10g00890
rosa_chinensis	RchiOBHm_Chr1g0331561 RchiOBHm_Chr6g0277181 RchiOBHm_Chr6g0277231 RchiOBHm_Chr6g0277261 RchiOBHm_Chr6g0277281 RchiOBHm_Chr6g0277311 RchiOBHm_Chr6g0277321
rosa_laevigata	RLG00000013310 RLG00000013311 RLG00000013312 RLG00000013313 RLG00000013319 RLG00000013325
rosa_multiflora	Rmu_co8243651.1_g000001 Rmu_sc0000030.1_g000028 Rmu_sc0000030.1_g000031 Rmu_sc0000030.1_g000035
rosa_roxburghii	Rroxscaffold_4G00319070 Rroxscaffold_7G00191450 Rroxscaffold_7G00191460 Rroxscaffold_7G00191470 Rroxscaffold_7G00191540
rosa_rugosa	Rorug01G0094000 Rorug01G0094100 Rorug06G0107000 Rorug06G0107100
rosa_samantha	Rh1BG090100 Rh1CG113500 Rh6BG221900 Rh6DG214200 Rh6DG214400 Rh6DG214700 Rh6DG214900
rosa_wichuraiana	Rw6G019010 Rw6G019020 Rw6G019030 Rw6G019040 Rw6G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	101
AciI	CCGC	4 cut(s)	198, 299, 500, 613
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	2 cut(s)	201, 671
AfaI	GTAC	6 cut(s)	37, 103, 208, 445, 510, 644
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflII	CTTAAG	1 cut(s)	581
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	6 cut(s)	327, 392, 479, 544, 568, 667
AjnI	CCWGG	2 cut(s)	456, 625
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	1 cut(s)	52
ApoI	RAATTY	2 cut(s)	201, 671
AseI	ATTAAT	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	483
Asp718I	GGTACC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	361, 409
AxyI	CCTNAGG	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	581
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	2 cut(s)	458, 627
BclI	TGATCA	1 cut(s)	42
BcnI	CCSGG	1 cut(s)	61
BfrI	CTTAAG	1 cut(s)	581
Bme1390I	CCNGG	3 cut(s)	61, 458, 627
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	3 cut(s)	61, 458, 627
BmsI	GCATC	2 cut(s)	462, 526
BpiI	GAAGAC	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	451, 554
Bse21I	CCTNAGG	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	458, 627
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	2 cut(s)	79, 453
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	2 cut(s)	5, 419
BseNI	ACTGG	2 cut(s)	451, 554
BshFI	GGCC	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	713
BsnI	GGCC	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	206
Bsp143I	GATC	9 cut(s)	7, 42, 153, 330, 373, 427, 465, 619, 702
BspACI	CCGC	4 cut(s)	198, 299, 500, 613
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	2 cut(s)	6, 418
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	101
BspTI	CTTAAG	1 cut(s)	581
BsrGI	TGTACA	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	451, 554
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	9 cut(s)	7, 42, 153, 330, 373, 427, 465, 619, 702
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	458, 627
Bst4CI	ACNGT	3 cut(s)	40, 127, 226
BstAFI	CTTAAG	1 cut(s)	581
BstAUI	TGTACA	1 cut(s)	206
BstDEI	CTNAG	3 cut(s)	14, 191, 405
BstF5I	GGATG	2 cut(s)	79, 453
BstKTI	GATC	9 cut(s)	10, 45, 156, 333, 376, 430, 468, 622, 705
BstMBI	GATC	9 cut(s)	7, 42, 153, 330, 373, 427, 465, 619, 702
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	2 cut(s)	458, 627
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	3 cut(s)	59, 456, 625
BstV2I	GAAGAC	1 cut(s)	581
Bsu36I	CCTNAGG	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	79, 453
BtsIMutI	CAGTG	4 cut(s)	121, 123, 561, 615
CsiI	ACCWGGT	1 cut(s)	625
Csp6I	GTAC	6 cut(s)	36, 102, 207, 444, 509, 643
CviAII	CATG	3 cut(s)	134, 646, 724
CviJI	RGCY	6 cut(s)	54, 82, 241, 323, 461, 610
CviKI_1	RGCY	6 cut(s)	54, 82, 241, 323, 461, 610
CviQI	GTAC	6 cut(s)	36, 102, 207, 444, 509, 643
DdeI	CTNAG	3 cut(s)	14, 191, 405
DpnI	GATC	9 cut(s)	9, 44, 155, 332, 375, 429, 467, 621, 704
DpnII	GATC	9 cut(s)	7, 42, 153, 330, 373, 427, 465, 619, 702
EaeI	YGGCCR	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	69
Eco81I	CCTNAGG	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	456, 625
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	3 cut(s)	137, 649, 727
FaiI	YATR	8 cut(s)	135, 360, 378, 464, 489, 597, 647, 725
FatI	CATG	3 cut(s)	133, 645, 723
FauI	CCCGC	1 cut(s)	620
FbaI	TGATCA	1 cut(s)	42
FokI	GGATG	2 cut(s)	86, 440
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	61
Hin1II	CATG	3 cut(s)	137, 649, 727
HinfI	GANTC	2 cut(s)	364, 577
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	2 cut(s)	361, 409
Hpy166II	GTNNAC	2 cut(s)	444, 559
Hpy188I	TCNGA	4 cut(s)	272, 408, 432, 700
Hpy188III	TCNNGA	4 cut(s)	13, 173, 392, 565
Hpy8I	GTNNAC	2 cut(s)	444, 559
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	3 cut(s)	40, 127, 226
HpyCH4V	TGCA	3 cut(s)	221, 236, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	3 cut(s)	14, 191, 405
Hsp92II	CATG	3 cut(s)	137, 649, 727
KpnI	GGTACC	1 cut(s)	105
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	9 cut(s)	7, 42, 153, 330, 373, 427, 465, 619, 702
LweI	GCATC	2 cut(s)	462, 526
MabI	ACCWGGT	1 cut(s)	625
MaeIII	GTNAC	2 cut(s)	163, 599
MalI	GATC	9 cut(s)	9, 44, 155, 332, 375, 429, 467, 621, 704
MboI	GATC	9 cut(s)	7, 42, 153, 330, 373, 427, 465, 619, 702
MboII	GAAGA	2 cut(s)	163, 586
MluCI	AATT	4 cut(s)	84, 201, 662, 671
MlyI	GAGTC	1 cut(s)	571
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	4 cut(s)	9, 115, 180, 388
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	2 cut(s)	21, 582
MspCI	CTTAAG	1 cut(s)	581
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	3 cut(s)	61, 458, 627
Mva1269I	GAATGC	1 cut(s)	713
MvaI	CCWGG	2 cut(s)	458, 627
MwoI	GCNNNNNNNGC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	9 cut(s)	7, 42, 153, 330, 373, 427, 465, 619, 702
NlaIII	CATG	3 cut(s)	137, 649, 727
NlaIV	GGNNCC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	137
PciI	ACATGT	1 cut(s)	133
PctI	GAATGC	1 cut(s)	713
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	364
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PscI	ACATGT	1 cut(s)	133
PshBI	ATTAAT	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	456, 625
PspGI	CCWGG	2 cut(s)	456, 625
PspN4I	GGNNCC	1 cut(s)	103
RsaI	GTAC	6 cut(s)	37, 103, 208, 445, 510, 644
RsaNI	GTAC	6 cut(s)	36, 102, 207, 444, 509, 643
SaqAI	TTAA	2 cut(s)	21, 582
Sau3AI	GATC	9 cut(s)	7, 42, 153, 330, 373, 427, 465, 619, 702
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	3 cut(s)	61, 458, 627
SetI	ASST	6 cut(s)	107, 214, 307, 388, 399, 628
SexAI	ACCWGGT	1 cut(s)	625
SfaNI	GCATC	2 cut(s)	462, 526
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	4 cut(s)	84, 201, 662, 671
SsiI	CCGC	4 cut(s)	198, 299, 500, 613
StyD4I	CCNGG	3 cut(s)	59, 456, 625
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	40, 127, 226
TaqI	TCGA	1 cut(s)	717
TasI	AATT	4 cut(s)	84, 201, 662, 671
TatI	WGTACW	4 cut(s)	206, 443, 508, 642
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	2 cut(s)	21, 582
Tru9I	TTAA	2 cut(s)	21, 582
TscAI	CASTG	4 cut(s)	121, 130, 561, 622
TspDTI	ATGAA	4 cut(s)	243, 369, 476, 662
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	4 cut(s)	121, 130, 561, 622
Vha464I	CTTAAG	1 cut(s)	581
VspI	ATTAAT	1 cut(s)	21
XapI	RAATTY	2 cut(s)	201, 671
XceI	RCATGY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.