RLG00000013312

alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
29588946 .. 29591902
2957 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013312

Sequence Viewer

Length: 1143 bp
ATGTCCAACACTGCTGGCAAGGTGATCAAGTGCAAAGCTGCGGTAGCCTGGGAAGCTGGGAAGCCGCTGGTTATTGAGGAAGTGGAGGTGGCACCACCCCAGAAACATGAAGTACGGTTGAAGATCCTCTTTACGGCTCTATGCCACACTGATGTATACTTCTGGGAAGCAAAGGGACAAAATCCACTGTTCCCTCGGATTTTTGGTCATGAAGCTGGAGGAATCGTGGAAAGCGTAGGTGAGGGTGTAACTGAACTCCAACCGGGAGACCATGTCCTCCCGGTGTTCACCGGAGAATGCAAGGAGTGCGCACATTGTAAGTCAGAGGAAAGCAACATGTGTGATCTCCTAAGGATTAATACCGACAGGGGTACCATGCTCAATGATGGCCAGACCCGGTTTTCCAAGGATGGAAAGCCAATTTATCACTTTGTTGGTACCTCTACATTCAGTGAATACACTGTTTCGCATGTTGGTTCTGTTGCAAAGATCAACCCTGCAGCGCCTCTTGACAAAGTTTGTGTTCTTAGTTGCGGAATTTGTACAGGTTTTGGTGCAACTGTAAATGTTGCAAAGCCGAAAAAGGGTTCATCTGTTGCCATTTTCGGATTGGGTGCTGTTGGTCTTGCTGCTGCGGAAGGTGCAAGGGTTTCTGGGGCTTCAAGGATCATTGGAGTTGATCTGAACTCCAACCGATTTGAGGAAGCCAAGAAGTTTGGGGTGAATGAATTTGTGAATCCAAAAGATCATAACAAACCTGTTCAGGAGGTGATAGCTGAGATGACCAATGGTGGAGTTGACAGGAGTGTTGAGTGCACTGGAAGCATCCAGGCTATGGTCTCTGCCTTTGAATGTGTTCATGATGGTTGGGGAGTTGCTGTGCTTGTTGGAGTGCCAAACAAAGACGATGCATTCAAAACCCATCCGATGAACTTCTTGAATGAGAGGACTCTGAAGGGTACTTTCTATGGTAACTACAAGCCCCGCACCGATCTACCTGGTGTTGTGGAGAAGTACATGAACAAGGAGATGGAATTGGACAAATTTATCACTCACTCTGTTTCTTTCTCTGAGATCAACAAGGCATTTGAGTACATGCTGGCAGGACAGGGAATCCGGTGCATCATCCGCATGGAGCATTAG

Protein Analysis

381

Amino Acids

41.28

Weight (kDa)

6.33

Isoelectric Point (pI)

29.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 35 - 164 2.5e-19 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 206 - 337 1.1e-26 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 310
Acc65I GGTACC 2 cut(s) 371, 437
AccB1I GGYRCC 3 cut(s) 91, 371, 437
AccB7I CCANNNNNTGG 1 cut(s) 835
AccI GTMKAC 1 cut(s) 156
AciI CCGC 6 cut(s) 41, 65, 534, 635, 985, 1129
AclWI GGATC 2 cut(s) 118, 674
AcoI YGGCCR 1 cut(s) 388
AcsI RAATTY 3 cut(s) 537, 728, 1043
AcuI CTGAAG 1 cut(s) 974
AfaI GTAC 7 cut(s) 114, 373, 439, 544, 961, 1016, 1094
AfiI CCNNNNNNNGG 4 cut(s) 133, 584, 700, 835
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 5 cut(s) 121, 663, 851, 916, 940
AjnI CCWGG 3 cut(s) 47, 828, 997
AluBI AGCT 4 cut(s) 38, 56, 215, 776
AluI AGCT 4 cut(s) 38, 56, 215, 776
Alw21I GWGCWC 1 cut(s) 818
Alw26I GTCTC 2 cut(s) 261, 844
Alw44I GTGCAC 1 cut(s) 814
AlwI GGATC 2 cut(s) 118, 674
AoxI GGCC 1 cut(s) 388
ApaLI GTGCAC 1 cut(s) 814
ApeKI GCWGC 4 cut(s) 38, 500, 629, 632
ApoI RAATTY 3 cut(s) 537, 728, 1043
AseI ATTAAT 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 855
Asp718I GGTACC 2 cut(s) 371, 437
AspLEI GCGC 2 cut(s) 311, 505
AsuC2I CCSGG 3 cut(s) 264, 281, 397
AsuHPI GGTGA 5 cut(s) 34, 251, 280, 733, 781
AxyI CCTNAGG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 818
BaeI ACNNNNGTAYC 2 cut(s) 355, 388
BalI TGGCCA 1 cut(s) 390
BanI GGYRCC 3 cut(s) 91, 371, 437
Bbv12I GWGCWC 1 cut(s) 818
BbvI GCAGC 4 cut(s) 25, 512, 616, 619
BccI CCATC 5 cut(s) 380, 404, 857, 930, 1024
BceAI ACGGC 1 cut(s) 150
BciT130I CCWGG 3 cut(s) 49, 830, 999
BclI TGATCA 1 cut(s) 24
BcnI CCSGG 3 cut(s) 264, 281, 397
BcoDI GTCTC 2 cut(s) 261, 844
BfmI CTRYAG 1 cut(s) 498
BfoI RGCGCY 1 cut(s) 506
BisI GCNGC 5 cut(s) 39, 65, 501, 630, 633
BlsI GCNGC 5 cut(s) 40, 66, 502, 631, 634
Bme1390I CCNGG 6 cut(s) 49, 264, 281, 397, 830, 999
BmiI GGNNCC 3 cut(s) 93, 373, 439
BmrFI CCNGG 6 cut(s) 49, 264, 281, 397, 830, 999
BmsI GCATC 3 cut(s) 834, 898, 1131
BpmI CTGGAG 1 cut(s) 237
BpuMI CCSGG 3 cut(s) 264, 281, 397
BsaI GGTCTC 2 cut(s) 261, 844
BsaJI CCNNGG 3 cut(s) 48, 194, 405
BsaWI WCCGGW 2 cut(s) 290, 1116
BsaXI ACNNNNNCTCC 6 cut(s) 210, 240, 258, 288, 864, 894
Bsc4I CCNNNNNNNGG 4 cut(s) 133, 584, 700, 835
Bse1I ACTGG 1 cut(s) 823
Bse21I CCTNAGG 1 cut(s) 350
BseBI CCWGG 3 cut(s) 49, 830, 999
BseDI CCNNGG 3 cut(s) 48, 194, 405
BseGI GGATG 4 cut(s) 415, 825, 922, 1125
BseLI CCNNNNNNNGG 4 cut(s) 133, 584, 700, 835
BseMII CTCAG 2 cut(s) 768, 1062
BseNI ACTGG 1 cut(s) 823
BseSI GKGCMC 1 cut(s) 818
BseXI GCAGC 4 cut(s) 25, 512, 616, 619
BseYI CCCAGC 1 cut(s) 56
BshFI GGCC 1 cut(s) 390
BshNI GGYRCC 3 cut(s) 91, 371, 437
BsiHKAI GWGCWC 1 cut(s) 818
BsiSI CCGG 5 cut(s) 263, 281, 291, 397, 1117
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 4 cut(s) 133, 584, 700, 835
BsmAI GTCTC 2 cut(s) 261, 844
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 2 cut(s) 302, 911
BsnI GGCC 1 cut(s) 390
Bso31I GGTCTC 2 cut(s) 261, 844
Bsp1286I GDGCHC 1 cut(s) 818
Bsp1407I TGTACA 1 cut(s) 542
Bsp143I GATC 9 cut(s) 24, 123, 343, 489, 666, 679, 745, 991, 1074
BspACI CCGC 6 cut(s) 41, 65, 534, 635, 985, 1129
BspANI GGCC 1 cut(s) 390
BspCNI CTCAG 2 cut(s) 769, 1063
BspHI TCATGA 2 cut(s) 208, 859
BspLI GGNNCC 3 cut(s) 93, 373, 439
BspMAI CTGCAG 1 cut(s) 502
BspPI GGATC 2 cut(s) 118, 674
BspT107I GGYRCC 3 cut(s) 91, 371, 437
BspTNI GGTCTC 2 cut(s) 261, 844
BsrGI TGTACA 1 cut(s) 542
BsrI ACTGG 1 cut(s) 823
BssECI CCNNGG 3 cut(s) 48, 194, 405
BssMI GATC 9 cut(s) 24, 123, 343, 489, 666, 679, 745, 991, 1074
BssNAI GTATAC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 405
Bst1107I GTATAC 1 cut(s) 157
Bst2UI CCWGG 3 cut(s) 49, 830, 999
Bst4CI ACNGT 4 cut(s) 117, 189, 463, 562
BstAPI GCANNNNNTGC 1 cut(s) 306
BstAUI TGTACA 1 cut(s) 542
BstC8I GCNNGC 2 cut(s) 16, 1101
BstDEI CTNAG 4 cut(s) 350, 527, 777, 1071
BstF5I GGATG 4 cut(s) 415, 825, 922, 1125
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 2 cut(s) 311, 505
BstKTI GATC 9 cut(s) 27, 126, 346, 492, 669, 682, 748, 994, 1077
BstMAI GTCTC 2 cut(s) 261, 844
BstMBI GATC 9 cut(s) 24, 123, 343, 489, 666, 679, 745, 991, 1074
BstMWI GCNNNNNNNGC 6 cut(s) 44, 53, 306, 641, 822, 1128
BstNI CCWGG 3 cut(s) 49, 830, 999
BstNSI RCATGY 3 cut(s) 340, 473, 1099
BstSCI CCNGG 6 cut(s) 47, 262, 279, 395, 828, 997
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 818
BstV1I GCAGC 4 cut(s) 25, 512, 616, 619
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BstZ17I GTATAC 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 1 cut(s) 390
BtsCI GGATG 4 cut(s) 415, 825, 922, 1125
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 6 cut(s) 9, 147, 185, 457, 459, 816
Cac8I GCNNGC 2 cut(s) 16, 1101
CciI TCATGA 2 cut(s) 208, 859
CfoI GCGC 2 cut(s) 311, 505
CsiI ACCWGGT 1 cut(s) 997
Csp6I GTAC 7 cut(s) 113, 372, 438, 543, 960, 1015, 1093
CviQI GTAC 7 cut(s) 113, 372, 438, 543, 960, 1015, 1093
DdeI CTNAG 4 cut(s) 350, 527, 777, 1071
DpnI GATC 9 cut(s) 26, 125, 345, 491, 668, 681, 747, 993, 1076
DpnII GATC 9 cut(s) 24, 123, 343, 489, 666, 679, 745, 991, 1074
EaeI YGGCCR 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 405
Eco31I GGTCTC 2 cut(s) 261, 844
Eco57I CTGAAG 1 cut(s) 974
Eco81I CCTNAGG 1 cut(s) 350
EcoRII CCWGG 3 cut(s) 47, 828, 997
EcoT14I CCWWGG 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 913
ErhI CCWWGG 1 cut(s) 405
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 189
FauI CCCGC 1 cut(s) 992
FbaI TGATCA 1 cut(s) 24
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 5 cut(s) 39, 65, 501, 630, 633
FokI GGATG 4 cut(s) 422, 812, 909, 1112
Fsp4HI GCNGC 5 cut(s) 39, 65, 501, 630, 633
FspAI RTGCGCAY 1 cut(s) 310
FspI TGCGCA 1 cut(s) 310
GlaI GCGC 2 cut(s) 310, 504
GluI GCNGC 5 cut(s) 39, 65, 501, 630, 633
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 237
HaeII RGCGCY 1 cut(s) 506
HaeIII GGCC 1 cut(s) 390
HapII CCGG 5 cut(s) 263, 281, 291, 397, 1117
HhaI GCGC 2 cut(s) 311, 505
Hin6I GCGC 2 cut(s) 309, 503
HinP1I GCGC 2 cut(s) 309, 503
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HinfI GANTC 4 cut(s) 222, 736, 949, 1113
HpaII CCGG 5 cut(s) 263, 281, 291, 397, 1117
HphI GGTGA 5 cut(s) 34, 251, 280, 733, 781
Hpy166II GTNNAC 4 cut(s) 157, 288, 799, 816
Hpy188I TCNGA 7 cut(s) 198, 325, 608, 684, 927, 954, 1072
Hpy188III TCNNGA 5 cut(s) 209, 509, 764, 860, 937
Hpy8I GTNNAC 4 cut(s) 157, 288, 799, 816
HpyAV CCTTC 2 cut(s) 632, 949
HpyCH4III ACNGT 4 cut(s) 117, 189, 463, 562
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 53, 306, 641, 822, 1128
HpyF3I CTNAG 4 cut(s) 350, 527, 777, 1071
HspAI GCGC 2 cut(s) 309, 503
KpnI GGTACC 2 cut(s) 375, 441
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 9 cut(s) 24, 123, 343, 489, 666, 679, 745, 991, 1074
LmnI GCTCC 1 cut(s) 1135
Lsp1109I GCAGC 4 cut(s) 25, 512, 616, 619
LweI GCATC 3 cut(s) 834, 898, 1131
MabI ACCWGGT 1 cut(s) 997
MaeIII GTNAC 2 cut(s) 247, 971
MalI GATC 9 cut(s) 26, 125, 345, 491, 668, 681, 747, 993, 1076
MboI GATC 9 cut(s) 24, 123, 343, 489, 666, 679, 745, 991, 1074
MboII GAAGA 1 cut(s) 133
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 818
MlsI TGGCCA 1 cut(s) 390
MluCI AATT 5 cut(s) 420, 537, 728, 1034, 1043
MluNI TGGCCA 1 cut(s) 390
MlyI GAGTC 1 cut(s) 943
MmeI TCCRAC 4 cut(s) 30, 283, 714, 868
Mox20I TGGCCA 1 cut(s) 390
Mph1103I ATGCAT 1 cut(s) 913
MroXI GAANNNNTTC 1 cut(s) 855
MscI TGGCCA 1 cut(s) 390
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 2 cut(s) 150, 1130
Msp20I TGGCCA 1 cut(s) 390
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 5 cut(s) 263, 281, 291, 397, 1117
MspR9I CCNGG 6 cut(s) 49, 264, 281, 397, 830, 999
Mva1269I GAATGC 2 cut(s) 302, 911
MvaI CCWGG 3 cut(s) 49, 830, 999
MwoI GCNNNNNNNGC 6 cut(s) 44, 53, 306, 641, 822, 1128
NciI CCSGG 3 cut(s) 264, 281, 397
NdeII GATC 9 cut(s) 24, 123, 343, 489, 666, 679, 745, 991, 1074
NlaIV GGNNCC 3 cut(s) 93, 373, 439
NsbI TGCGCA 1 cut(s) 310
NsiI ATGCAT 1 cut(s) 913
NspI RCATGY 3 cut(s) 340, 473, 1099
PagI TCATGA 2 cut(s) 208, 859
PciI ACATGT 1 cut(s) 336
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 2 cut(s) 302, 911
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 3 cut(s) 222, 736, 1113
PflFI GACNNNGTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 835
PkrI GCNGC 5 cut(s) 40, 66, 502, 631, 634
PleI GAGTC 1 cut(s) 943
PpsI GAGTC 1 cut(s) 943
PscI ACATGT 1 cut(s) 336
PshBI ATTAAT 1 cut(s) 357
Psp6I CCWGG 3 cut(s) 47, 828, 997
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 3 cut(s) 47, 828, 997
PspN4I GGNNCC 3 cut(s) 93, 373, 439
PstI CTGCAG 1 cut(s) 502
PsuI RGATCY 1 cut(s) 123
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 7 cut(s) 114, 373, 439, 544, 961, 1016, 1094
RsaNI GTAC 7 cut(s) 113, 372, 438, 543, 960, 1015, 1093
RseI CAYNNNNRTG 2 cut(s) 150, 1130
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 5 cut(s) 39, 65, 501, 630, 633
Sau3AI GATC 9 cut(s) 24, 123, 343, 489, 666, 679, 745, 991, 1074
SchI GAGTC 1 cut(s) 943
ScrFI CCNGG 6 cut(s) 49, 264, 281, 397, 830, 999
SduI GDGCHC 1 cut(s) 818
SexAI ACCWGGT 1 cut(s) 997
SfaNI GCATC 3 cut(s) 834, 898, 1131
SfcI CTRYAG 1 cut(s) 498
SmiMI CAYNNNNRTG 2 cut(s) 150, 1130
Sse9I AATT 5 cut(s) 420, 537, 728, 1034, 1043
SsiI CCGC 6 cut(s) 41, 65, 534, 635, 985, 1129
StyD4I CCNGG 6 cut(s) 47, 262, 279, 395, 828, 997
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 4 cut(s) 117, 189, 463, 562
TasI AATT 5 cut(s) 420, 537, 728, 1034, 1043
TatI WGTACW 3 cut(s) 542, 1014, 1092
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 3 cut(s) 222, 736, 1113
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 6 cut(s) 16, 154, 192, 457, 466, 823
TseI GCWGC 4 cut(s) 38, 500, 629, 632
TspDTI ATGAA 7 cut(s) 123, 225, 579, 741, 848, 944, 1034
TspRI CASTG 6 cut(s) 16, 154, 192, 457, 466, 823
Tth111I GACNNNGTC 1 cut(s) 272
Van91I CCANNNNNTGG 1 cut(s) 835
VneI GTGCAC 1 cut(s) 814
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 3 cut(s) 537, 728, 1043
XceI RCATGY 3 cut(s) 340, 473, 1099
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 855
Zsp2I ATGCAT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.