Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000815

Physical Location & Seq

Genomic Coordinates Reverse (-)

2569055 .. 2571412

Gene Structure 2358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1013200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTCTAATACTGCTGGTCAGGTCATACGCTGCAGAGCTGCTGTAGCTTGGGAAGCAGGGAAGCCGCTGGTGATTGAAGAAGTCGAGGTGGCACCACCACAAGCAAATGAAGTCCGTTTGAAGATCCTTTTCACCTCTTTGTGCCACACTGATGTCTACTTTTGGGAAGCCAAGGGACAAAACCCTTTATTTCCTAGAATTTATGGTCATGAGGCAGGAGGGATTGTGGAGAGTGTTGGTGAGGGCGTGACGGATCTGAAAGCCGGTGATCATGTCCTGCCGGTGTTCACAGGGGAATGCAAGGACTGCGCTCACTGCAAATCAGAAGAGAGCAACATGTGCGACCTCCTCAGGATAAACACTGACAGGGGAGTGATGCTCAATGATGGCAAATCAAGATTTTCAATCAAAGGCAAGCCTATCTATCACTTTGTTGGGACTTCCACCTTCAGTGAGTACACTGTTGTTCATGTTGGCTGCCTTGCCAAGATCAACCCCTCGGCTCCTCTAGACAAAGTCTGTGTCCTCAGTTGTGGAATATCCACAGGTCTCGGAGCTACTCTAAATGTTGCAAAACCGAAAAAGGGATCAACCGTGGCTGTTTTCGGATTAGGAGCTGTAGGCCTTGCAGCTGCCGAAGGAGCCAGGATGTCTGGCGCTTCAAGAATTATCGGCGTCGATTTGAATTCGAGCAGATTTGAAGAAGCGAAAAAGTTTGGCGTGACGGAATTTGTGAACCCAAAAGAGCACAAAAAACCCGTTCAAGAGGTGATAGCCGAGCTGACGAATGGAGGAGTGGACAGAAGCATTGAATGCACAGGAAATGTTGAAGCCATGATATCTGCGTTTGAGTGCGTCCATGATGGTTGGGGTGTGGCAGTTCTTGTGGGAGTACCACACAAAGAAGCCGTCTTCAAGACGCATCCGGTGAACTTTCTGAACGAGAGGACTCTCAAGGGCACCTTCTTCGGGAACTACAAGCCTCGAACGGACATTCCCTCTGTCGTGGAGAAGTACATGAACAAGGAACTGGAGCTAGAAAAATTCATCACCCACAGAGTCCCATTCTCAGAAATAAACAAGGCGTTTGAGTACATGCTTAAAGGGGAAGGTCTTCGTTGCATAATCAACATGGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko00625 ko00626 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00071 map00350 map00592 map00625 map00626 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

381

Amino Acids

41.37

Weight (kDa)

6.44

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	35 - 164	2.6e-19	Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C	PF16912	197 - 364	2.4e-06	Glucose dehydrogenase C-terminus
ADH_zinc_N	PF00107	206 - 337	4e-29	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77120
fragaria_vesca	FvH4_2g14750 FvH4_2g14750 FvH4_2g14760 FvH4_2g14760
malus_domestica	MD05G1013200.v1.1 MD05G1013400.v1.1 MD05G1179800.v1.1 MD05G1180800.v1.1 MD08G1068100.v1.1 MD09G1211500.v1.1 MD10G1013800.v1.1 MD10G1013900.v1.1 MD10G1014200.v1.1 MD10G1014500.v1.1 MD11G1004800.v1.1
prunus_persica	Prupe.8G018100_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018600_v2.0.a1 Prupe.8G207100_v2.0.a1 Prupe.8G207400_v2.0.a1
pyrus_communis	pycom05g00790 pycom05g16630 pycom10g00850 pycom10g00860 pycom10g00890
rosa_chinensis	RchiOBHm_Chr1g0331561 RchiOBHm_Chr6g0277181 RchiOBHm_Chr6g0277231 RchiOBHm_Chr6g0277261 RchiOBHm_Chr6g0277281 RchiOBHm_Chr6g0277311 RchiOBHm_Chr6g0277321
rosa_laevigata	RLG00000013310 RLG00000013311 RLG00000013312 RLG00000013313 RLG00000013319 RLG00000013325
rosa_multiflora	Rmu_co8243651.1_g000001 Rmu_sc0000030.1_g000028 Rmu_sc0000030.1_g000031 Rmu_sc0000030.1_g000035
rosa_roxburghii	Rroxscaffold_4G00319070 Rroxscaffold_7G00191450 Rroxscaffold_7G00191460 Rroxscaffold_7G00191470 Rroxscaffold_7G00191540
rosa_rugosa	Rorug01G0094000 Rorug01G0094100 Rorug06G0107000 Rorug06G0107100
rosa_samantha	Rh1BG090100 Rh1CG113500 Rh6BG221900 Rh6DG214200 Rh6DG214400 Rh6DG214700 Rh6DG214900
rosa_wichuraiana	Rw6G019010 Rw6G019020 Rw6G019030 Rw6G019040 Rw6G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	91, 959
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	3 cut(s)	118, 261, 595
AcsI	RAATTY	4 cut(s)	198, 685, 728, 1043
AcuI	CTGAAG	1 cut(s)	433
AcyI	GRCGYC	1 cut(s)	675
AfaI	GTAC	4 cut(s)	458, 894, 1016, 1094
AfiI	CCNNNNNNNGG	2 cut(s)	584, 969
AflIII	ACRYGT	1 cut(s)	336
AjnI	CCWGG	1 cut(s)	644
AloI	GAACNNNNNNTCC	2 cut(s)	979, 1011
AluBI	AGCT	7 cut(s)	38, 47, 557, 617, 632, 781, 1036
AluI	AGCT	7 cut(s)	38, 47, 557, 617, 632, 781, 1036
Alw21I	GWGCWC	1 cut(s)	750
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	3 cut(s)	118, 261, 595
AoxI	GGCC	1 cut(s)	622
ApeKI	GCWGC	5 cut(s)	30, 38, 477, 629, 632
ApoI	RAATTY	4 cut(s)	198, 685, 728, 1043
ArsI	GACNNNNNNTTYG	4 cut(s)	507, 539, 894, 926
Asp700I	GAANNNNTTC	1 cut(s)	1113
AspLEI	GCGC	2 cut(s)	311, 659
AsuHPI	GGTGA	7 cut(s)	82, 124, 251, 278, 781, 940, 1042
AxyI	CCTNAGG	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	962
BanI	GGYRCC	2 cut(s)	91, 959
BbsI	GAAGAC	2 cut(s)	904, 1106
Bbv12I	GWGCWC	1 cut(s)	750
BbvI	GCAGC	5 cut(s)	17, 25, 464, 619, 641
BccI	CCATC	2 cut(s)	380, 857
BceAI	ACGGC	1 cut(s)	893
BcgI	CGANNNNNNTGC	2 cut(s)	949, 983
BciT130I	CCWGG	1 cut(s)	646
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	3 cut(s)	195, 509, 1037
BfmI	CTRYAG	3 cut(s)	31, 42, 618
BfoI	RGCGCY	1 cut(s)	660
BisI	GCNGC	6 cut(s)	31, 39, 65, 478, 630, 633
BlsI	GCNGC	6 cut(s)	32, 40, 66, 479, 631, 634
Bme1390I	CCNGG	1 cut(s)	646
BmiI	GGNNCC	4 cut(s)	93, 504, 643, 961
BmrFI	CCNGG	1 cut(s)	646
BmsI	GCATC	2 cut(s)	366, 931
BpiI	GAAGAC	2 cut(s)	904, 1106
BplI	GAGNNNNNCTC	2 cut(s)	363, 395
BpmI	CTGGAG	1 cut(s)	1052
BpuEI	CTTGAG	1 cut(s)	938
BsaHI	GRCGYC	1 cut(s)	675
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	3 cut(s)	171, 498, 594
BsaWI	WCCGGW	1 cut(s)	925
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	584, 969
Bse118I	RCCGGY	2 cut(s)	263, 280
Bse1I	ACTGG	1 cut(s)	1035
Bse21I	CCTNAGG	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	646
BseDI	CCNNGG	3 cut(s)	171, 498, 594
BseGI	GGATG	2 cut(s)	654, 922
BseLI	CCNNNNNNNGG	2 cut(s)	584, 969
BseMII	CTCAG	3 cut(s)	364, 541, 1083
BseNI	ACTGG	1 cut(s)	1035
BseRI	GAGGAG	3 cut(s)	338, 495, 807
BseSI	GKGCMC	1 cut(s)	962
BseXI	GCAGC	5 cut(s)	17, 25, 464, 619, 641
BshFI	GGCC	1 cut(s)	624
BshNI	GGYRCC	2 cut(s)	91, 959
BsiHKAI	GWGCWC	1 cut(s)	750
BsiSI	CCGG	3 cut(s)	264, 281, 926
BslFI	GGGAC	3 cut(s)	189, 451, 1046
BslI	CCNNNNNNNGG	2 cut(s)	584, 969
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	3 cut(s)	189, 451, 1046
BsmI	GAATGC	2 cut(s)	302, 818
BsnI	GGCC	1 cut(s)	624
Bso31I	GGTCTC	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	750, 962
Bsp143I	GATC	5 cut(s)	123, 253, 268, 489, 587
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	3 cut(s)	363, 540, 1082
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	4 cut(s)	93, 504, 643, 961
BspMAI	CTGCAG	1 cut(s)	35
BspPI	GGATC	3 cut(s)	118, 261, 595
BspT107I	GGYRCC	2 cut(s)	91, 959
BspTNI	GGTCTC	1 cut(s)	554
BsrFI	RCCGGY	2 cut(s)	263, 280
BsrI	ACTGG	1 cut(s)	1035
BssAI	RCCGGY	2 cut(s)	263, 280
BssECI	CCNNGG	3 cut(s)	171, 498, 594
BssMI	GATC	5 cut(s)	123, 253, 268, 489, 587
BssNI	GRCGYC	1 cut(s)	675
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	646
Bst4CI	ACNGT	2 cut(s)	463, 595
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	675
BstAPI	GCANNNNNTGC	3 cut(s)	306, 339, 813
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	3 cut(s)	350, 527, 1069
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	2 cut(s)	654, 922
BstH2I	RGCGCY	1 cut(s)	660
BstHHI	GCGC	2 cut(s)	311, 659
BstKTI	GATC	5 cut(s)	126, 256, 271, 492, 590
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	5 cut(s)	123, 253, 268, 489, 587
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 53, 306, 315, 339, 641, 813
BstNI	CCWGG	1 cut(s)	646
BstNSI	RCATGY	2 cut(s)	340, 1099
BstSCI	CCNGG	1 cut(s)	644
BstSFI	CTRYAG	3 cut(s)	31, 42, 618
BstSLI	GKGCMC	1 cut(s)	962
BstV1I	GCAGC	5 cut(s)	17, 25, 464, 619, 641
BstV2I	GAAGAC	2 cut(s)	904, 1106
BstX2I	RGATCY	2 cut(s)	123, 253
BstYI	RGATCY	2 cut(s)	123, 253
Bsu36I	CCTNAGG	1 cut(s)	350
BsuRI	GGCC	1 cut(s)	624
BtgI	CCRYGG	1 cut(s)	594
BtsCI	GGATG	2 cut(s)	654, 922
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	5 cut(s)	147, 313, 360, 457, 459
Cac8I	GCNNGC	1 cut(s)	416
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	2 cut(s)	311, 659
Cfr10I	RCCGGY	2 cut(s)	263, 280
CseI	GACGC	3 cut(s)	664, 844, 928
Csp6I	GTAC	4 cut(s)	457, 893, 1015, 1093
CviAII	CATG	9 cut(s)	209, 272, 337, 470, 835, 860, 1018, 1096, 1132
CviQI	GTAC	4 cut(s)	457, 893, 1015, 1093
DdeI	CTNAG	3 cut(s)	350, 527, 1069
DpnI	GATC	5 cut(s)	125, 255, 270, 491, 589
DpnII	GATC	5 cut(s)	123, 253, 268, 489, 587
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	624
Eco31I	GGTCTC	1 cut(s)	554
Eco32I	GATATC	1 cut(s)	840
Eco57I	CTGAAG	1 cut(s)	433
Eco81I	CCTNAGG	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	685
EcoRII	CCWGG	1 cut(s)	644
EcoRV	GATATC	1 cut(s)	840
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	9 cut(s)	212, 275, 340, 473, 838, 863, 1021, 1099, 1135
FalI	AAGNNNNNCTT	2 cut(s)	947, 979
FaqI	GGGAC	3 cut(s)	189, 451, 1046
FatI	CATG	9 cut(s)	208, 271, 336, 469, 834, 859, 1017, 1095, 1131
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	6 cut(s)	31, 39, 65, 478, 630, 633
FokI	GGATG	2 cut(s)	661, 909
Fsp4HI	GCNGC	6 cut(s)	31, 39, 65, 478, 630, 633
FspBI	CTAG	3 cut(s)	195, 509, 1037
GlaI	GCGC	2 cut(s)	310, 658
GluI	GCNGC	6 cut(s)	31, 39, 65, 478, 630, 633
GsuI	CTGGAG	1 cut(s)	1052
HaeII	RGCGCY	1 cut(s)	660
HaeIII	GGCC	1 cut(s)	624
HapII	CCGG	3 cut(s)	264, 281, 926
HgaI	GACGC	3 cut(s)	664, 844, 928
HhaI	GCGC	2 cut(s)	311, 659
Hin1I	GRCGYC	1 cut(s)	675
Hin1II	CATG	9 cut(s)	212, 275, 340, 473, 838, 863, 1021, 1099, 1135
Hin6I	GCGC	2 cut(s)	309, 657
HinP1I	GCGC	2 cut(s)	309, 657
HinfI	GANTC	2 cut(s)	949, 1059
HpaII	CCGG	3 cut(s)	264, 281, 926
HphI	GGTGA	7 cut(s)	82, 124, 251, 278, 781, 940, 1042
Hpy166II	GTNNAC	6 cut(s)	157, 288, 459, 736, 799, 931
Hpy188I	TCNGA	6 cut(s)	258, 325, 554, 608, 939, 1072
Hpy188III	TCNNGA	8 cut(s)	209, 352, 396, 509, 663, 764, 916, 970
Hpy8I	GTNNAC	6 cut(s)	157, 288, 459, 736, 799, 931
Hpy99I	CGWCG	1 cut(s)	680
HpyAV	CCTTC	4 cut(s)	457, 632, 973, 1103
HpyCH4III	ACNGT	2 cut(s)	463, 595
HpyCH4V	TGCA	7 cut(s)	33, 300, 318, 572, 629, 816, 1122
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 53, 306, 315, 339, 641, 813
HpyF3I	CTNAG	3 cut(s)	350, 527, 1069
Hsp92I	GRCGYC	1 cut(s)	675
Hsp92II	CATG	9 cut(s)	212, 275, 340, 473, 838, 863, 1021, 1099, 1135
HspAI	GCGC	2 cut(s)	309, 657
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	5 cut(s)	123, 253, 268, 489, 587
LmnI	GCTCC	5 cut(s)	508, 554, 614, 641, 1033
Lsp1109I	GCAGC	5 cut(s)	17, 25, 464, 619, 641
LweI	GCATC	2 cut(s)	366, 931
MaeI	CTAG	3 cut(s)	195, 509, 1037
MaeIII	GTNAC	2 cut(s)	247, 721
MalI	GATC	5 cut(s)	125, 255, 270, 491, 589
MboI	GATC	5 cut(s)	123, 253, 268, 489, 587
MboII	GAAGA	7 cut(s)	89, 133, 338, 713, 904, 958, 1106
MflI	RGATCY	2 cut(s)	123, 253
MhlI	GDGCHC	2 cut(s)	750, 962
MluCI	AATT	5 cut(s)	198, 666, 685, 728, 1043
MlyI	GAGTC	2 cut(s)	943, 1068
MroXI	GAANNNNTTC	1 cut(s)	1113
MseI	TTAA	1 cut(s)	1101
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	2 cut(s)	67, 632
MspI	CCGG	3 cut(s)	264, 281, 926
MspR9I	CCNGG	1 cut(s)	646
Mva1269I	GAATGC	2 cut(s)	302, 818
MvaI	CCWGG	1 cut(s)	646
MwoI	GCNNNNNNNGC	7 cut(s)	44, 53, 306, 315, 339, 641, 813
NdeII	GATC	5 cut(s)	123, 253, 268, 489, 587
NlaIII	CATG	9 cut(s)	212, 275, 340, 473, 838, 863, 1021, 1099, 1135
NlaIV	GGNNCC	4 cut(s)	93, 504, 643, 961
NmeAIII	GCCGAG	2 cut(s)	479, 802
NmuCI	GTSAC	2 cut(s)	247, 721
NspI	RCATGY	2 cut(s)	340, 1099
PagI	TCATGA	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	624
PciI	ACATGT	1 cut(s)	336
PctI	GAATGC	2 cut(s)	302, 818
PdmI	GAANNNNTTC	1 cut(s)	1113
PflFI	GACNNNGTC	1 cut(s)	515
PkrI	GCNGC	6 cut(s)	32, 40, 66, 479, 631, 634
PleI	GAGTC	2 cut(s)	943, 1067
PpsI	GAGTC	2 cut(s)	943, 1067
PscI	ACATGT	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	644
PspGI	CCWGG	1 cut(s)	644
PspN4I	GGNNCC	4 cut(s)	93, 504, 643, 961
PstI	CTGCAG	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	123, 253
PsyI	GACNNNGTC	1 cut(s)	515
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	4 cut(s)	458, 894, 1016, 1094
RsaNI	GTAC	4 cut(s)	457, 893, 1015, 1093
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	1101
SatI	GCNGC	6 cut(s)	31, 39, 65, 478, 630, 633
Sau3AI	GATC	5 cut(s)	123, 253, 268, 489, 587
SchI	GAGTC	2 cut(s)	943, 1068
ScrFI	CCNGG	1 cut(s)	646
SduI	GDGCHC	2 cut(s)	750, 962
SfaNI	GCATC	2 cut(s)	366, 931
SfcI	CTRYAG	3 cut(s)	31, 42, 618
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	953
SmoI	CTYRAG	1 cut(s)	953
Sse9I	AATT	5 cut(s)	198, 666, 685, 728, 1043
SseBI	AGGCCT	1 cut(s)	624
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	3 cut(s)	195, 509, 1037
StuI	AGGCCT	1 cut(s)	624
StyD4I	CCNGG	1 cut(s)	644
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	463, 595
TaqI	TCGA	4 cut(s)	84, 678, 689, 985
TasI	AATT	5 cut(s)	198, 666, 685, 728, 1043
TatI	WGTACW	3 cut(s)	456, 1014, 1092
TauI	GCSGC	1 cut(s)	67
Tru1I	TTAA	1 cut(s)	1101
Tru9I	TTAA	1 cut(s)	1101
TscAI	CASTG	5 cut(s)	154, 320, 367, 457, 466
TseFI	GTSAC	2 cut(s)	247, 721
TseI	GCWGC	5 cut(s)	30, 38, 477, 629, 632
Tsp45I	GTSAC	2 cut(s)	247, 721
TspDTI	ATGAA	4 cut(s)	123, 458, 1034, 1036
TspGWI	ACGGA	4 cut(s)	104, 266, 740, 1004
TspRI	CASTG	5 cut(s)	154, 320, 367, 457, 466
Tth111I	GACNNNGTC	1 cut(s)	515
XapI	RAATTY	4 cut(s)	198, 685, 728, 1043
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	2 cut(s)	340, 1099
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	1113
XspI	CTAG	3 cut(s)	195, 509, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.