Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8243651.1

Orthogroup ID

OG0000815

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 438

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8243651.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 355 bp

aatcgtggaaagtgtaggcgagggtgtaactgaactccaaccgggagaccatgtcctccaggtgttcaccggagaatgcaaggagtgcgcacattgtaactcagaggaaagcaacatgtgtgatctactaaggattaatcccgacaagggtactatgctcaatgacggccagaccctgttttccaaggatggaaagccaatttatcactttgttggtacctctacatttagtgaatacactatttcacatgttggttccgttgcgaagatcaaccctgcagcgcctcttgacaaagtttgtgttcttagttgcggaatttgtataggttcggctgaacaaacttatcacatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

117

Amino Acids

12.58

Weight (kDa)

4.86

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77120
fragaria_vesca	FvH4_2g14750 FvH4_2g14750 FvH4_2g14760 FvH4_2g14760
malus_domestica	MD05G1013200.v1.1 MD05G1013400.v1.1 MD05G1179800.v1.1 MD05G1180800.v1.1 MD08G1068100.v1.1 MD09G1211500.v1.1 MD10G1013800.v1.1 MD10G1013900.v1.1 MD10G1014200.v1.1 MD10G1014500.v1.1 MD11G1004800.v1.1
prunus_persica	Prupe.8G018100_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018600_v2.0.a1 Prupe.8G207100_v2.0.a1 Prupe.8G207400_v2.0.a1
pyrus_communis	pycom05g00790 pycom05g16630 pycom10g00850 pycom10g00860 pycom10g00890
rosa_chinensis	RchiOBHm_Chr1g0331561 RchiOBHm_Chr6g0277181 RchiOBHm_Chr6g0277231 RchiOBHm_Chr6g0277261 RchiOBHm_Chr6g0277281 RchiOBHm_Chr6g0277311 RchiOBHm_Chr6g0277321
rosa_laevigata	RLG00000013310 RLG00000013311 RLG00000013312 RLG00000013313 RLG00000013319 RLG00000013325
rosa_multiflora	Rmu_co8243651.1_g000001 Rmu_sc0000030.1_g000028 Rmu_sc0000030.1_g000031 Rmu_sc0000030.1_g000035
rosa_roxburghii	Rroxscaffold_4G00319070 Rroxscaffold_7G00191450 Rroxscaffold_7G00191460 Rroxscaffold_7G00191470 Rroxscaffold_7G00191540
rosa_rugosa	Rorug01G0094000 Rorug01G0094100 Rorug06G0107000 Rorug06G0107100
rosa_samantha	Rh1BG090100 Rh1CG113500 Rh6BG221900 Rh6DG214200 Rh6DG214400 Rh6DG214700 Rh6DG214900
rosa_wichuraiana	Rw6G019010 Rw6G019020 Rw6G019030 Rw6G019040 Rw6G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	89
Acc65I	GGTACC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	216
AciI	CCGC	1 cut(s)	313
AcoI	YGGCCR	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	316
AfaI	GTAC	2 cut(s)	152, 218
AfiI	CCNNNNNNNGG	1 cut(s)	147
AflIII	ACRYGT	2 cut(s)	115, 248
AjnI	CCWGG	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	40
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	316
AseI	ATTAAT	1 cut(s)	136
Asp718I	GGTACC	1 cut(s)	216
AspLEI	GCGC	2 cut(s)	90, 284
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	1 cut(s)	183
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	60
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	40
BfmI	CTRYAG	1 cut(s)	277
BfoI	RGCGCY	1 cut(s)	285
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	43, 60
BmiI	GGNNCC	2 cut(s)	218, 257
BmrFI	CCNGG	2 cut(s)	43, 60
BpmI	CTGGAG	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	184
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	291
BshFI	GGCC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	42, 70
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	169
Bso31I	GGTCTC	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	122, 268
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	218, 257
BspMAI	CTGCAG	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	122, 268
BssT1I	CCWWGG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	85
BstDEI	CTNAG	3 cut(s)	101, 129, 306
BstF5I	GGATG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	2 cut(s)	90, 284
BstKTI	GATC	2 cut(s)	125, 271
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	2 cut(s)	122, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	2 cut(s)	119, 252
BstSCI	CCNGG	2 cut(s)	41, 58
BstSFI	CTRYAG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	194
CaiI	CAGNNNCTG	1 cut(s)	176
CfoI	GCGC	2 cut(s)	90, 284
Csp6I	GTAC	2 cut(s)	151, 217
CviAII	CATG	3 cut(s)	51, 116, 249
CviJI	RGCY	3 cut(s)	169, 197, 333
CviKI_1	RGCY	3 cut(s)	169, 197, 333
CviQI	GTAC	2 cut(s)	151, 217
DdeI	CTNAG	3 cut(s)	101, 129, 306
DpnI	GATC	2 cut(s)	124, 270
DpnII	GATC	2 cut(s)	122, 268
EaeI	YGGCCR	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	3 cut(s)	54, 119, 252
FaiI	YATR	5 cut(s)	52, 117, 156, 250, 324
FatI	CATG	3 cut(s)	50, 115, 248
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	280
FspAI	RTGCGCAY	1 cut(s)	89
FspI	TGCGCA	1 cut(s)	89
GlaI	GCGC	2 cut(s)	89, 283
GluI	GCNGC	1 cut(s)	280
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	2 cut(s)	42, 70
HhaI	GCGC	2 cut(s)	90, 284
Hin1II	CATG	3 cut(s)	54, 119, 252
Hin6I	GCGC	2 cut(s)	88, 282
HinP1I	GCGC	2 cut(s)	88, 282
HpaII	CCGG	2 cut(s)	42, 70
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	2 cut(s)	141, 288
Hpy8I	GTNNAC	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	79, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	3 cut(s)	101, 129, 306
Hsp92II	CATG	3 cut(s)	54, 119, 252
HspAI	GCGC	2 cut(s)	88, 282
KpnI	GGTACC	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	122, 268
LpnPI	CCDG	7 cut(s)	45, 55, 72, 83, 183, 189, 289
Lsp1109I	GCAGC	1 cut(s)	291
MaeIII	GTNAC	2 cut(s)	26, 96
MalI	GATC	2 cut(s)	124, 270
MboI	GATC	2 cut(s)	122, 268
MboII	GAAGA	1 cut(s)	278
MluCI	AATT	2 cut(s)	199, 316
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	5 cut(s)	14, 66, 98, 230, 295
MseI	TTAA	2 cut(s)	136, 353
MspI	CCGG	2 cut(s)	42, 70
MspR9I	CCNGG	2 cut(s)	43, 60
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	85
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	2 cut(s)	122, 268
NlaIII	CATG	3 cut(s)	54, 119, 252
NlaIV	GGNNCC	2 cut(s)	218, 257
NsbI	TGCGCA	1 cut(s)	89
NspI	RCATGY	2 cut(s)	119, 252
PciI	ACATGT	2 cut(s)	115, 248
PctI	GAATGC	1 cut(s)	81
PflFI	GACNNNGTC	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	281
PscI	ACATGT	2 cut(s)	115, 248
PshBI	ATTAAT	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	218, 257
PstI	CTGCAG	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	51
RsaI	GTAC	2 cut(s)	152, 218
RsaNI	GTAC	2 cut(s)	151, 217
SaqAI	TTAA	2 cut(s)	136, 353
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	2 cut(s)	122, 268
ScrFI	CCNGG	2 cut(s)	43, 60
SetI	ASST	3 cut(s)	64, 222, 329
SfcI	CTRYAG	1 cut(s)	277
Sse9I	AATT	2 cut(s)	199, 316
SsiI	CCGC	1 cut(s)	313
StyD4I	CCNGG	2 cut(s)	41, 58
StyI	CCWWGG	1 cut(s)	184
TasI	AATT	2 cut(s)	199, 316
Tru1I	TTAA	2 cut(s)	136, 353
Tru9I	TTAA	2 cut(s)	136, 353
TseI	GCWGC	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	248
Tth111I	GACNNNGTC	1 cut(s)	51
VspI	ATTAAT	1 cut(s)	136
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	2 cut(s)	119, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.