Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000815

Physical Location & Seq

Genomic Coordinates Reverse (-)

20656051 .. 20657906

Gene Structure 1856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1211500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAGAACCGCGGTGGCATGGGAAGCGGGGAAGCCACTGTCAATTGAGGAAGTGGAGGTGGCACCACCGCAGAAACATGAAGTTCGCTTGAAGATCCTCTTCACCTCTCTTTGCCACACCGATGTCTACTTCTGGGAAGCCAAAGGACAACAACCGCTGTTTCCTCGCATTTTCGGTCATGAAGCTGGAGGGTATGCGAGCGTAACTGAACTCCAGCCGGGTGACCACGTCCTCCCTGTGTTCACTGGGGAGTGCAAGGAGTGCGCGCACTGTAAGTCGAAGGAAAGCAACATGTGTGATCTGCTGAGGATCAATACTGATAGGGGTACCATGATCAATGATGGCCAGTCCAGGTTCTCCAAGGATGGAAAACCAATTTATCACTTTTTAGGTACTTCTACCTTCAGTGAATACACTGTTTGTCATGTTGGTTCCGTTGCTAAGATCAACCCGGCTGCTCCCCTTGACAAAGTTTGTGTTCTTAGTTGCGGAATATGCACAGGTTCGAAAGACTTCTCCCATTTTGACAGTGAAAAAGTTGGAATCAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

185

Amino Acids

20.32

Weight (kDa)

6.44

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	25 - 149	3.5e-13	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77120
fragaria_vesca	FvH4_2g14750 FvH4_2g14750 FvH4_2g14760 FvH4_2g14760
malus_domestica	MD05G1013200.v1.1 MD05G1013400.v1.1 MD05G1179800.v1.1 MD05G1180800.v1.1 MD08G1068100.v1.1 MD09G1211500.v1.1 MD10G1013800.v1.1 MD10G1013900.v1.1 MD10G1014200.v1.1 MD10G1014500.v1.1 MD11G1004800.v1.1
prunus_persica	Prupe.8G018100_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018600_v2.0.a1 Prupe.8G207100_v2.0.a1 Prupe.8G207400_v2.0.a1
pyrus_communis	pycom05g00790 pycom05g16630 pycom10g00850 pycom10g00860 pycom10g00890
rosa_chinensis	RchiOBHm_Chr1g0331561 RchiOBHm_Chr6g0277181 RchiOBHm_Chr6g0277231 RchiOBHm_Chr6g0277261 RchiOBHm_Chr6g0277281 RchiOBHm_Chr6g0277311 RchiOBHm_Chr6g0277321
rosa_laevigata	RLG00000013310 RLG00000013311 RLG00000013312 RLG00000013313 RLG00000013319 RLG00000013325
rosa_multiflora	Rmu_co8243651.1_g000001 Rmu_sc0000030.1_g000028 Rmu_sc0000030.1_g000031 Rmu_sc0000030.1_g000035
rosa_roxburghii	Rroxscaffold_4G00319070 Rroxscaffold_7G00191450 Rroxscaffold_7G00191460 Rroxscaffold_7G00191470 Rroxscaffold_7G00191540
rosa_rugosa	Rorug01G0094000 Rorug01G0094100 Rorug06G0107000 Rorug06G0107100
rosa_samantha	Rh1BG090100 Rh1CG113500 Rh6BG221900 Rh6DG214200 Rh6DG214400 Rh6DG214700 Rh6DG214900
rosa_wichuraiana	Rw6G019010 Rw6G019020 Rw6G019030 Rw6G019040 Rw6G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	326
AccB1I	GGYRCC	2 cut(s)	61, 326
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	2 cut(s)	11, 266
AciI	CCGC	6 cut(s)	9, 11, 26, 68, 155, 489
AclWI	GGATC	2 cut(s)	88, 317
AcoI	YGGCCR	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	388
AfaI	GTAC	2 cut(s)	328, 394
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	91
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
AlwI	GGATC	2 cut(s)	88, 317
AoxI	GGCC	1 cut(s)	343
ApeKI	GCWGC	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	512
Asp718I	GGTACC	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	266, 268
AsuC2I	CCSGG	2 cut(s)	219, 452
AsuHPI	GGTGA	2 cut(s)	94, 233
AsuII	TTCGAA	1 cut(s)	506
BalI	TGGCCA	1 cut(s)	345
BanI	GGYRCC	2 cut(s)	61, 326
BbvCI	CCTCAGC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	2 cut(s)	335, 359
BciT130I	CCWGG	1 cut(s)	352
BclI	TGATCA	1 cut(s)	333
BcnI	CCSGG	2 cut(s)	219, 452
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	3 cut(s)	219, 352, 452
BmgBI	CACGTC	1 cut(s)	229
BmiI	GGNNCC	3 cut(s)	63, 328, 433
BmrFI	CCNGG	3 cut(s)	219, 352, 452
BmrI	ACTGGG	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	255
BpmI	CTGGAG	2 cut(s)	197, 207
Bpu10I	CCTNAGC	1 cut(s)	305
Bpu14I	TTCGAA	1 cut(s)	506
BpuMI	CCSGG	2 cut(s)	219, 452
BsaJI	CCNNGG	2 cut(s)	9, 360
Bse1I	ACTGG	2 cut(s)	250, 346
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	2 cut(s)	9, 360
BseGI	GGATG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	2 cut(s)	250, 346
BsePI	GCGCGC	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	442
Bsh1236I	CGCG	2 cut(s)	11, 266
BshFI	GGCC	1 cut(s)	345
BshNI	GGYRCC	2 cut(s)	61, 326
BsiSI	CCGG	2 cut(s)	218, 452
BsnI	GGCC	1 cut(s)	345
Bsp119I	TTCGAA	1 cut(s)	506
Bsp143I	GATC	5 cut(s)	93, 298, 309, 333, 444
BspACI	CCGC	6 cut(s)	9, 11, 26, 68, 155, 489
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	1 cut(s)	297
BspFNI	CGCG	2 cut(s)	11, 266
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	3 cut(s)	63, 328, 433
BspPI	GGATC	2 cut(s)	88, 317
BspT104I	TTCGAA	1 cut(s)	506
BspT107I	GGYRCC	2 cut(s)	61, 326
BsrI	ACTGG	2 cut(s)	250, 346
BssECI	CCNNGG	2 cut(s)	9, 360
BssHII	GCGCGC	1 cut(s)	264
BssMI	GATC	5 cut(s)	93, 298, 309, 333, 444
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	4 cut(s)	39, 272, 418, 530
Bst6I	CTCTTC	1 cut(s)	104
BstAPI	GCANNNNNTGC	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	506
BstC8I	GCNNGC	2 cut(s)	199, 266
BstDEI	CTNAG	3 cut(s)	305, 441, 482
BstDSI	CCRYGG	1 cut(s)	9
BstEII	GGTNACC	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	2 cut(s)	11, 266
BstHHI	GCGC	2 cut(s)	266, 268
BstKTI	GATC	5 cut(s)	96, 301, 312, 336, 447
BstMBI	GATC	5 cut(s)	93, 298, 309, 333, 444
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 261, 495
BstNI	CCWGG	1 cut(s)	352
BstNSI	RCATGY	1 cut(s)	295
BstPI	GGTNACC	1 cut(s)	221
BstSCI	CCNGG	3 cut(s)	217, 350, 450
BstUI	CGCG	2 cut(s)	11, 266
BstV1I	GCAGC	1 cut(s)	442
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	345
BtgI	CCRYGG	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	370
BtsIMutI	CAGTG	6 cut(s)	35, 243, 268, 412, 414, 535
Cac8I	GCNNGC	2 cut(s)	199, 266
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	2 cut(s)	266, 268
Cfr42I	CCGCGG	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	327, 393
CviAII	CATG	6 cut(s)	18, 77, 179, 292, 331, 425
CviJI	RGCY	6 cut(s)	34, 140, 185, 217, 345, 455
CviKI_1	RGCY	6 cut(s)	34, 140, 185, 217, 345, 455
CviQI	GTAC	2 cut(s)	327, 393
DdeI	CTNAG	3 cut(s)	305, 441, 482
DpnI	GATC	5 cut(s)	95, 300, 311, 335, 446
DpnII	GATC	5 cut(s)	93, 298, 309, 333, 444
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	388
Eco91I	GGTNACC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	350
EcoT14I	CCWWGG	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	6 cut(s)	21, 80, 182, 295, 334, 428
FaiI	YATR	8 cut(s)	19, 78, 180, 195, 293, 332, 426, 496
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FatI	CATG	6 cut(s)	17, 76, 178, 291, 330, 424
FauI	CCCGC	1 cut(s)	19
FbaI	TGATCA	1 cut(s)	333
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	456
GlaI	GCGC	2 cut(s)	265, 267
GluI	GCNGC	1 cut(s)	456
GsuI	CTGGAG	2 cut(s)	197, 207
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	2 cut(s)	218, 452
HhaI	GCGC	2 cut(s)	266, 268
Hin1II	CATG	6 cut(s)	21, 80, 182, 295, 334, 428
Hin6I	GCGC	2 cut(s)	264, 266
HinP1I	GCGC	2 cut(s)	264, 266
HinfI	GANTC	1 cut(s)	543
HpaII	CCGG	2 cut(s)	218, 452
HphI	GGTGA	2 cut(s)	94, 233
Hpy166II	GTNNAC	2 cut(s)	127, 243
Hpy188I	TCNGA	1 cut(s)	548
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	127, 243
HpyAV	CCTTC	2 cut(s)	274, 412
HpyCH4III	ACNGT	4 cut(s)	39, 272, 418, 530
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	255, 498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 261, 495
HpyF3I	CTNAG	3 cut(s)	305, 441, 482
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	6 cut(s)	21, 80, 182, 295, 334, 428
HspAI	GCGC	2 cut(s)	264, 266
KpnI	GGTACC	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	333
KspI	CCGCGG	1 cut(s)	12
Kzo9I	GATC	5 cut(s)	93, 298, 309, 333, 444
LmnI	GCTCC	1 cut(s)	463
Lsp1109I	GCAGC	1 cut(s)	442
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	202, 221
MalI	GATC	5 cut(s)	95, 300, 311, 335, 446
MboI	GATC	5 cut(s)	93, 298, 309, 333, 444
MboII	GAAGA	2 cut(s)	91, 103
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	1 cut(s)	93
MlsI	TGGCCA	1 cut(s)	345
MluCI	AATT	3 cut(s)	42, 375, 550
MluNI	TGGCCA	1 cut(s)	345
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	8 cut(s)	40, 49, 107, 115, 174, 182, 242, 300
Mox20I	TGGCCA	1 cut(s)	345
MroXI	GAANNNNTTC	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	345
MspA1I	CMGCKG	2 cut(s)	11, 157
MspI	CCGG	2 cut(s)	218, 452
MspR9I	CCNGG	3 cut(s)	219, 352, 452
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	2 cut(s)	11, 266
MwoI	GCNNNNNNNGC	3 cut(s)	23, 261, 495
NciI	CCSGG	2 cut(s)	219, 452
NdeII	GATC	5 cut(s)	93, 298, 309, 333, 444
NlaIII	CATG	6 cut(s)	21, 80, 182, 295, 334, 428
NlaIV	GGNNCC	3 cut(s)	63, 328, 433
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	506
PagI	TCATGA	1 cut(s)	178
PauI	GCGCGC	1 cut(s)	264
PciI	ACATGT	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	1 cut(s)	543
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	457
PscI	ACATGT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	350
PspEI	GGTNACC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	3 cut(s)	63, 328, 433
PsuI	RGATCY	1 cut(s)	93
PsyI	GACNNNGTC	1 cut(s)	227
PteI	GCGCGC	1 cut(s)	264
RsaI	GTAC	2 cut(s)	328, 394
RsaNI	GTAC	2 cut(s)	327, 393
RseI	CAYNNNNRTG	1 cut(s)	120
SacII	CCGCGG	1 cut(s)	12
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	5 cut(s)	93, 298, 309, 333, 444
ScrFI	CCNGG	3 cut(s)	219, 352, 452
SetI	ASST	8 cut(s)	60, 107, 187, 231, 356, 394, 404, 505
Sfr303I	CCGCGG	1 cut(s)	12
SfuI	TTCGAA	1 cut(s)	506
SgrBI	CCGCGG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	3 cut(s)	42, 375, 550
SsiI	CCGC	6 cut(s)	9, 11, 26, 68, 155, 489
StyD4I	CCNGG	3 cut(s)	217, 350, 450
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	4 cut(s)	39, 272, 418, 530
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	278, 506
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	3 cut(s)	42, 375, 550
TfiI	GAWTC	1 cut(s)	543
TscAI	CASTG	6 cut(s)	42, 250, 275, 412, 421, 535
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	93, 195
TspGWI	ACGGA	1 cut(s)	424
TspRI	CASTG	6 cut(s)	42, 250, 275, 412, 421, 535
Tth111I	GACNNNGTC	1 cut(s)	227
XceI	RCATGY	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.