Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000815

Physical Location & Seq

Genomic Coordinates Reverse (-)

438527 .. 443893

Gene Structure 5367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1004800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAGAACCGCGATGGCATGGGAAGCGGGGAAGCCACTGTCAATTGAGGAAGTGGAGGTGGCACCACCGCAGAAACATGAAGTTCGCTTGAAGATCCTCTTCACCTCTCTTTGCCACACCGATGTCTACGTCTGGGAAGCCAAAGGACAACAACCGCTGTTTCCTCGCATTTTCGGTCATGAAGCTGGAGGCGAGGGCGTAACTGAACTCCAGCTGGGTGACCACGTCCTCCCTGTGTTCACTGGGGAGTGCAAGGAGTGCGTGCACTGTAAGTCGAAGGAAAGCAACATGTGTGATCTGTTGAGGATCAATACTGATAGGGGTACCATGATCAATGATGGCCAGTCCAGGTTCTCCAAGGATGGAAAACCAATTTATCACTTTTTAGGTACTTCTACCTTCAGTGAATACACTGTTTGTCATGTTGGTTCCGTTGCTAAGATCAACCCGGCTGCTCCCCTTGACAAAGTTTGTGTTCTTAGTTGCGGAATATGCACAAGTTTTGGCGCCACTGTGAATGTTGCAAAACCAAAAAAGGGTTCATCTATTGCCATCTTTGGATTGGGAGCTGTTGGTCTTGCTGCTGCTGAAGCCTTCAAGGGGTATATAATTGGACAAAGAACAAAGACATTCACATGGAGCCTAATGAATGTTGCTAGATGTTGGGAACCTATTAAGATTGATTTGGCAGACATGGAGGAAAAGAATGAAGAGGCTATTGCTGCCTTCATTGAAGAAGTCCACTTAAGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

252

Amino Acids

27.49

Weight (kDa)

6.15

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	25 - 148	2.4e-12	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77120
fragaria_vesca	FvH4_2g14750 FvH4_2g14750 FvH4_2g14760 FvH4_2g14760
malus_domestica	MD05G1013200.v1.1 MD05G1013400.v1.1 MD05G1179800.v1.1 MD05G1180800.v1.1 MD08G1068100.v1.1 MD09G1211500.v1.1 MD10G1013800.v1.1 MD10G1013900.v1.1 MD10G1014200.v1.1 MD10G1014500.v1.1 MD11G1004800.v1.1
prunus_persica	Prupe.8G018100_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018600_v2.0.a1 Prupe.8G207100_v2.0.a1 Prupe.8G207400_v2.0.a1
pyrus_communis	pycom05g00790 pycom05g16630 pycom10g00850 pycom10g00860 pycom10g00890
rosa_chinensis	RchiOBHm_Chr1g0331561 RchiOBHm_Chr6g0277181 RchiOBHm_Chr6g0277231 RchiOBHm_Chr6g0277261 RchiOBHm_Chr6g0277281 RchiOBHm_Chr6g0277311 RchiOBHm_Chr6g0277321
rosa_laevigata	RLG00000013310 RLG00000013311 RLG00000013312 RLG00000013313 RLG00000013319 RLG00000013325
rosa_multiflora	Rmu_co8243651.1_g000001 Rmu_sc0000030.1_g000028 Rmu_sc0000030.1_g000031 Rmu_sc0000030.1_g000035
rosa_roxburghii	Rroxscaffold_4G00319070 Rroxscaffold_7G00191450 Rroxscaffold_7G00191460 Rroxscaffold_7G00191470 Rroxscaffold_7G00191540
rosa_rugosa	Rorug01G0094000 Rorug01G0094100 Rorug06G0107000 Rorug06G0107100
rosa_samantha	Rh1BG090100 Rh1CG113500 Rh6BG221900 Rh6DG214200 Rh6DG214400 Rh6DG214700 Rh6DG214900
rosa_wichuraiana	Rw6G019010 Rw6G019020 Rw6G019030 Rw6G019040 Rw6G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	3 cut(s)	61, 323, 506
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	11
AciI	CCGC	5 cut(s)	9, 26, 68, 155, 486
AclWI	GGATC	2 cut(s)	88, 314
AcoI	YGGCCR	1 cut(s)	340
AcuI	CTGAAG	2 cut(s)	385, 609
AcyI	GRCGYC	1 cut(s)	507
AfaI	GTAC	2 cut(s)	325, 391
AfiI	CCNNNNNNNGG	2 cut(s)	536, 600
AflII	CTTAAG	1 cut(s)	745
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	91, 598, 734
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	523, 555
AluBI	AGCT	3 cut(s)	185, 214, 569
AluI	AGCT	3 cut(s)	185, 214, 569
Alw21I	GWGCWC	1 cut(s)	267
Alw44I	GTGCAC	1 cut(s)	263
AlwI	GGATC	2 cut(s)	88, 314
AoxI	GGCC	1 cut(s)	340
ApaLI	GTGCAC	1 cut(s)	263
ApeKI	GCWGC	4 cut(s)	452, 581, 584, 722
Asp718I	GGTACC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	509
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	2 cut(s)	94, 230
BaeGI	GKGCMC	1 cut(s)	267
BalI	TGGCCA	1 cut(s)	342
BanI	GGYRCC	3 cut(s)	61, 323, 506
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	4 cut(s)	439, 568, 571, 709
BccI	CCATC	4 cut(s)	7, 332, 356, 560
BciT130I	CCWGG	1 cut(s)	349
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	449
BfaI	CTAG	1 cut(s)	657
BfoI	RGCGCY	1 cut(s)	510
BfrI	CTTAAG	1 cut(s)	745
BisI	GCNGC	4 cut(s)	453, 582, 585, 723
BlsI	GCNGC	4 cut(s)	454, 583, 586, 724
Bme1390I	CCNGG	2 cut(s)	349, 449
BmgBI	CACGTC	1 cut(s)	226
BmiI	GGNNCC	6 cut(s)	63, 325, 430, 508, 641, 669
BmrFI	CCNGG	2 cut(s)	349, 449
BmrI	ACTGGG	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	252
BpmI	CTGGAG	2 cut(s)	194, 207
BpuMI	CCSGG	1 cut(s)	449
BsaHI	GRCGYC	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	2 cut(s)	536, 600
Bse1I	ACTGG	2 cut(s)	247, 343
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	2 cut(s)	536, 600
BseNI	ACTGG	2 cut(s)	247, 343
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	4 cut(s)	439, 568, 571, 709
BseYI	CCCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	342
BshNI	GGYRCC	3 cut(s)	61, 323, 506
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	449
BslI	CCNNNNNNNGG	2 cut(s)	536, 600
BsnI	GGCC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	5 cut(s)	93, 295, 306, 330, 441
BspACI	CCGC	5 cut(s)	9, 26, 68, 155, 486
BspANI	GGCC	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	11
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	6 cut(s)	63, 325, 430, 508, 641, 669
BspPI	GGATC	2 cut(s)	88, 314
BspT107I	GGYRCC	3 cut(s)	61, 323, 506
BspTI	CTTAAG	1 cut(s)	745
BsrI	ACTGG	2 cut(s)	247, 343
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	5 cut(s)	93, 295, 306, 330, 441
BssNI	GRCGYC	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	4 cut(s)	39, 269, 415, 514
Bst6I	CTCTTC	2 cut(s)	104, 705
BstACI	GRCGYC	1 cut(s)	507
BstAFI	CTTAAG	1 cut(s)	745
BstAPI	GCANNNNNTGC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	438, 479
BstEII	GGTNACC	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	5 cut(s)	96, 298, 309, 333, 444
BstMBI	GATC	5 cut(s)	93, 295, 306, 330, 441
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 258, 492, 590, 722
BstNI	CCWGG	1 cut(s)	349
BstNSI	RCATGY	1 cut(s)	292
BstPI	GGTNACC	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	347, 447
BstSLI	GKGCMC	1 cut(s)	267
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	4 cut(s)	439, 568, 571, 709
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	342
BtgZI	GCGATG	1 cut(s)	26
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	6 cut(s)	35, 240, 265, 409, 411, 510
Cac8I	GCNNGC	1 cut(s)	263
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	1 cut(s)	509
Csp6I	GTAC	2 cut(s)	324, 390
CviAII	CATG	8 cut(s)	18, 77, 179, 289, 328, 422, 636, 694
CviQI	GTAC	2 cut(s)	324, 390
DdeI	CTNAG	2 cut(s)	438, 479
DinI	GGCGCC	1 cut(s)	508
DpnI	GATC	5 cut(s)	95, 297, 308, 332, 443
DpnII	GATC	5 cut(s)	93, 295, 306, 330, 441
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	104, 705
EarI	CTCTTC	2 cut(s)	104, 705
Eco130I	CCWWGG	1 cut(s)	357
Eco57I	CTGAAG	2 cut(s)	385, 609
Eco91I	GGTNACC	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	357
EgeI	GGCGCC	1 cut(s)	508
EheI	GGCGCC	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	8 cut(s)	21, 80, 182, 292, 331, 425, 639, 697
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FatI	CATG	8 cut(s)	17, 76, 178, 288, 327, 421, 635, 693
FauI	CCCGC	1 cut(s)	19
FbaI	TGATCA	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	4 cut(s)	453, 582, 585, 723
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	4 cut(s)	453, 582, 585, 723
FspBI	CTAG	1 cut(s)	657
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	4 cut(s)	453, 582, 585, 723
GsaI	CCCAGC	1 cut(s)	218
GsuI	CTGGAG	2 cut(s)	194, 207
HaeII	RGCGCY	1 cut(s)	510
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	1 cut(s)	509
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	8 cut(s)	21, 80, 182, 292, 331, 425, 639, 697
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	2 cut(s)	94, 230
Hpy166II	GTNNAC	4 cut(s)	127, 240, 265, 742
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	4 cut(s)	127, 240, 265, 742
HpyAV	CCTTC	4 cut(s)	271, 409, 604, 736
HpyCH4III	ACNGT	4 cut(s)	39, 269, 415, 514
HpyCH4IV	ACGT	2 cut(s)	129, 225
HpyCH4V	TGCA	4 cut(s)	252, 265, 495, 524
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 258, 492, 590, 722
HpyF3I	CTNAG	2 cut(s)	438, 479
HpySE526I	ACGT	2 cut(s)	129, 225
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	8 cut(s)	21, 80, 182, 292, 331, 425, 639, 697
HspAI	GCGC	1 cut(s)	507
KasI	GGCGCC	1 cut(s)	506
KpnI	GGTACC	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	5 cut(s)	93, 295, 306, 330, 441
LmnI	GCTCC	3 cut(s)	460, 566, 639
Lsp1109I	GCAGC	4 cut(s)	439, 568, 571, 709
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	2 cut(s)	129, 225
MaeIII	GTNAC	2 cut(s)	199, 218
MalI	GATC	5 cut(s)	95, 297, 308, 332, 443
MboI	GATC	5 cut(s)	93, 295, 306, 330, 441
MboII	GAAGA	4 cut(s)	91, 103, 722, 746
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	3 cut(s)	42, 372, 609
MluNI	TGGCCA	1 cut(s)	342
Mly113I	GGCGCC	1 cut(s)	507
Mox20I	TGGCCA	1 cut(s)	342
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	3 cut(s)	675, 746, 754
MslI	CAYNNNNRTG	2 cut(s)	120, 634
Msp20I	TGGCCA	1 cut(s)	342
MspA1I	CMGCKG	2 cut(s)	157, 214
MspCI	CTTAAG	1 cut(s)	745
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	349, 449
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	349
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	5 cut(s)	23, 258, 492, 590, 722
NarI	GGCGCC	1 cut(s)	507
NciI	CCSGG	1 cut(s)	449
NdeII	GATC	5 cut(s)	93, 295, 306, 330, 441
NlaIII	CATG	8 cut(s)	21, 80, 182, 292, 331, 425, 639, 697
NlaIV	GGNNCC	6 cut(s)	63, 325, 430, 508, 641, 669
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	1 cut(s)	292
PagI	TCATGA	1 cut(s)	178
PciI	ACATGT	1 cut(s)	288
PflFI	GACNNNGTC	1 cut(s)	224
PkrI	GCNGC	4 cut(s)	454, 583, 586, 724
PluTI	GGCGCC	1 cut(s)	510
PscI	ACATGT	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	347
PspEI	GGTNACC	1 cut(s)	218
PspFI	CCCAGC	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	6 cut(s)	63, 325, 430, 508, 641, 669
PsuI	RGATCY	1 cut(s)	93
PsyI	GACNNNGTC	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	214
RsaI	GTAC	2 cut(s)	325, 391
RsaNI	GTAC	2 cut(s)	324, 390
RseI	CAYNNNNRTG	2 cut(s)	120, 634
SaqAI	TTAA	3 cut(s)	675, 746, 754
SatI	GCNGC	4 cut(s)	453, 582, 585, 723
Sau3AI	GATC	5 cut(s)	93, 295, 306, 330, 441
ScrFI	CCNGG	2 cut(s)	349, 449
SduI	GDGCHC	1 cut(s)	267
SfoI	GGCGCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	2 cut(s)	120, 634
SmlI	CTYRAG	1 cut(s)	745
SmoI	CTYRAG	1 cut(s)	745
Sse9I	AATT	3 cut(s)	42, 372, 609
SsiI	CCGC	5 cut(s)	9, 26, 68, 155, 486
SspDI	GGCGCC	1 cut(s)	506
SspMI	CTAG	1 cut(s)	657
StyD4I	CCNGG	2 cut(s)	347, 447
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	4 cut(s)	39, 269, 415, 514
TaiI	ACGT	2 cut(s)	132, 228
TaqI	TCGA	1 cut(s)	275
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	3 cut(s)	42, 372, 609
Tru1I	TTAA	3 cut(s)	675, 746, 754
Tru9I	TTAA	3 cut(s)	675, 746, 754
TscAI	CASTG	6 cut(s)	42, 247, 272, 409, 418, 517
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	4 cut(s)	452, 581, 584, 722
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	6 cut(s)	93, 195, 531, 662, 718, 723
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	6 cut(s)	42, 247, 272, 409, 418, 517
Tth111I	GACNNNGTC	1 cut(s)	224
Vha464I	CTTAAG	1 cut(s)	745
VneI	GTGCAC	1 cut(s)	263
XceI	RCATGY	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.