Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000815

Physical Location & Seq

Genomic Coordinates Forward (+)

37902325 .. 37903939

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G019030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTGTGATCTCTTAAGGATTAATACCGACAGGGGTACTATGCTCAATGACGGCCAGACCCGGTTTTCCAAGGATGGAAAGCCAATTTATCACTTTGTTGGTACCTCTACATTCAGTGAATACACTGTTTCACATGTTGGTTCCGTTGCGAAGATCAACCCTGCAGCGCCTCTTGACAAAGTTTGTGTTCTTAGTTGCGGAATTTGTACAGGTTTTGGTGCAACTGTAAATGTTGCAAGGCCGAAAAAGGGTTCATCTGTTGCCATTTTCGGATTGGGTGCTGTTGGTCTTGCTGCTGCGGAAGGTGCAAGGGTTTCTGGGGCTTCAAGGATCATTGGAGTTGATCTGAACTCCAACCGATTTGAGGAAGCGAAGAAGTTTGGGGTGAATGAATTTGTGAACCCAAAAGATCATAACAAACCTGTTCAGGAGGTGATAGCTGAGATGACCAATGGTGGAGTTGATAGGAGTGTTGAGTGCACTGGAAGCATCCAGGCTATGATCTCTGCCTTTGAATGTGTTCATGATGGTTGGGGAGTTGCTGTACTTGTTGGAGTGCCAAGCAAAGACGATGCATTCAAAACCCATCCGATGAACTTCTTGAATGAGAGGACTCTGAAGGGTACTTTCTATGGTAACTACAAGCCCCGCACAGATCTACCTGGTGTTGTGGAGAAGTACATGAACAAGGAGATGGAATTGGACAAATTTATCACTCACTCTGTTCCTTTCTCTGAGATCAACAAGGCATTTGAGTACATGCTGGCAGGACAGGGAATCCGGTGCATCATCCGCATGGAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

268

Amino Acids

29.11

Weight (kDa)

7.61

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glu_dehyd_C	PF16912	85 - 253	3.2e-06	Glucose dehydrogenase C-terminus
ADH_zinc_N	PF00107	94 - 225	2.8e-27	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77120
fragaria_vesca	FvH4_2g14750 FvH4_2g14750 FvH4_2g14760 FvH4_2g14760
malus_domestica	MD05G1013200.v1.1 MD05G1013400.v1.1 MD05G1179800.v1.1 MD05G1180800.v1.1 MD08G1068100.v1.1 MD09G1211500.v1.1 MD10G1013800.v1.1 MD10G1013900.v1.1 MD10G1014200.v1.1 MD10G1014500.v1.1 MD11G1004800.v1.1
prunus_persica	Prupe.8G018100_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018600_v2.0.a1 Prupe.8G207100_v2.0.a1 Prupe.8G207400_v2.0.a1
pyrus_communis	pycom05g00790 pycom05g16630 pycom10g00850 pycom10g00860 pycom10g00890
rosa_chinensis	RchiOBHm_Chr1g0331561 RchiOBHm_Chr6g0277181 RchiOBHm_Chr6g0277231 RchiOBHm_Chr6g0277261 RchiOBHm_Chr6g0277281 RchiOBHm_Chr6g0277311 RchiOBHm_Chr6g0277321
rosa_laevigata	RLG00000013310 RLG00000013311 RLG00000013312 RLG00000013313 RLG00000013319 RLG00000013325
rosa_multiflora	Rmu_co8243651.1_g000001 Rmu_sc0000030.1_g000028 Rmu_sc0000030.1_g000031 Rmu_sc0000030.1_g000035
rosa_roxburghii	Rroxscaffold_4G00319070 Rroxscaffold_7G00191450 Rroxscaffold_7G00191460 Rroxscaffold_7G00191470 Rroxscaffold_7G00191540
rosa_rugosa	Rorug01G0094000 Rorug01G0094100 Rorug06G0107000 Rorug06G0107100
rosa_samantha	Rh1BG090100 Rh1CG113500 Rh6BG221900 Rh6DG214200 Rh6DG214400 Rh6DG214700 Rh6DG214900
rosa_wichuraiana	Rw6G019010 Rw6G019020 Rw6G019030 Rw6G019040 Rw6G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	101
AciI	CCGC	4 cut(s)	198, 299, 649, 793
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	3 cut(s)	201, 392, 707
AcuI	CTGAAG	1 cut(s)	638
AfaI	GTAC	7 cut(s)	37, 103, 208, 546, 625, 680, 758
AfiI	CCNNNNNNNGG	2 cut(s)	248, 364
AflII	CTTAAG	1 cut(s)	13
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	4 cut(s)	327, 515, 580, 604
AjnI	CCWGG	2 cut(s)	492, 661
AluBI	AGCT	1 cut(s)	440
AluI	AGCT	1 cut(s)	440
Alw21I	GWGCWC	1 cut(s)	482
Alw44I	GTGCAC	1 cut(s)	478
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	2 cut(s)	52, 239
ApaLI	GTGCAC	1 cut(s)	478
ApeKI	GCWGC	3 cut(s)	164, 293, 296
ApoI	RAATTY	3 cut(s)	201, 392, 707
AseI	ATTAAT	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	519
Asp718I	GGTACC	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	397, 445
BaeGI	GKGCMC	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	3 cut(s)	176, 280, 283
BccI	CCATC	4 cut(s)	68, 521, 594, 688
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	2 cut(s)	494, 663
BcnI	CCSGG	1 cut(s)	61
BfmI	CTRYAG	1 cut(s)	162
BfoI	RGCGCY	1 cut(s)	170
BfrI	CTTAAG	1 cut(s)	13
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	3 cut(s)	165, 294, 297
BlsI	GCNGC	3 cut(s)	166, 295, 298
Bme1390I	CCNGG	3 cut(s)	61, 494, 663
BmiI	GGNNCC	2 cut(s)	103, 142
BmrFI	CCNGG	3 cut(s)	61, 494, 663
BmsI	GCATC	3 cut(s)	498, 562, 795
BpuMI	CCSGG	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	780
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 364
Bse1I	ACTGG	1 cut(s)	487
BseBI	CCWGG	2 cut(s)	494, 663
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	4 cut(s)	79, 489, 586, 789
BseLI	CCNNNNNNNGG	2 cut(s)	248, 364
BseMII	CTCAG	2 cut(s)	432, 726
BseNI	ACTGG	1 cut(s)	487
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	3 cut(s)	176, 280, 283
BshFI	GGCC	2 cut(s)	54, 241
BshNI	GGYRCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	61, 781
BslI	CCNNNNNNNGG	2 cut(s)	248, 364
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	2 cut(s)	54, 241
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp1407I	TGTACA	1 cut(s)	206
Bsp143I	GATC	8 cut(s)	7, 153, 330, 343, 409, 501, 655, 738
BspACI	CCGC	4 cut(s)	198, 299, 649, 793
BspANI	GGCC	2 cut(s)	54, 241
BspCNI	CTCAG	2 cut(s)	433, 727
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	103, 142
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	101
BspTI	CTTAAG	1 cut(s)	13
BsrGI	TGTACA	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	8 cut(s)	7, 153, 330, 343, 409, 501, 655, 738
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	494, 663
Bst4CI	ACNGT	2 cut(s)	127, 226
BstAFI	CTTAAG	1 cut(s)	13
BstAUI	TGTACA	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	765
BstDEI	CTNAG	3 cut(s)	191, 441, 735
BstF5I	GGATG	4 cut(s)	79, 489, 586, 789
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	8 cut(s)	10, 156, 333, 346, 412, 504, 658, 741
BstMBI	GATC	8 cut(s)	7, 153, 330, 343, 409, 501, 655, 738
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 486, 792
BstNI	CCWGG	2 cut(s)	494, 663
BstNSI	RCATGY	2 cut(s)	137, 763
BstSCI	CCNGG	3 cut(s)	59, 492, 661
BstSFI	CTRYAG	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	482
BstV1I	GCAGC	3 cut(s)	176, 280, 283
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BsuRI	GGCC	2 cut(s)	54, 241
BtsCI	GGATG	4 cut(s)	79, 489, 586, 789
BtsIMutI	CAGTG	3 cut(s)	121, 123, 480
Cac8I	GCNNGC	1 cut(s)	765
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	1 cut(s)	169
CsiI	ACCWGGT	1 cut(s)	661
Csp6I	GTAC	7 cut(s)	36, 102, 207, 545, 624, 679, 757
CviAII	CATG	5 cut(s)	134, 524, 682, 760, 796
CviJI	RGCY	7 cut(s)	54, 82, 241, 323, 440, 497, 646
CviKI_1	RGCY	7 cut(s)	54, 82, 241, 323, 440, 497, 646
CviQI	GTAC	7 cut(s)	36, 102, 207, 545, 624, 679, 757
DdeI	CTNAG	3 cut(s)	191, 441, 735
DpnI	GATC	8 cut(s)	9, 155, 332, 345, 411, 503, 657, 740
DpnII	GATC	8 cut(s)	7, 153, 330, 343, 409, 501, 655, 738
EaeI	YGGCCR	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	638
EcoRII	CCWGG	2 cut(s)	492, 661
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	5 cut(s)	137, 527, 685, 763, 799
FaiI	YATR	9 cut(s)	41, 135, 414, 500, 525, 633, 683, 761, 797
FatI	CATG	5 cut(s)	133, 523, 681, 759, 795
FauI	CCCGC	1 cut(s)	656
Fnu4HI	GCNGC	3 cut(s)	165, 294, 297
FokI	GGATG	4 cut(s)	86, 476, 573, 776
Fsp4HI	GCNGC	3 cut(s)	165, 294, 297
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	3 cut(s)	165, 294, 297
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	54, 241
HapII	CCGG	2 cut(s)	61, 781
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	5 cut(s)	137, 527, 685, 763, 799
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	2 cut(s)	613, 777
HpaII	CCGG	2 cut(s)	61, 781
HphI	GGTGA	2 cut(s)	397, 445
Hpy166II	GTNNAC	2 cut(s)	400, 480
Hpy188I	TCNGA	5 cut(s)	272, 348, 591, 618, 736
Hpy188III	TCNNGA	4 cut(s)	173, 428, 524, 601
Hpy8I	GTNNAC	2 cut(s)	400, 480
HpyAV	CCTTC	2 cut(s)	296, 613
HpyCH4III	ACNGT	2 cut(s)	127, 226
HpyCH4V	TGCA	7 cut(s)	164, 221, 236, 308, 480, 575, 786
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 486, 792
HpyF3I	CTNAG	3 cut(s)	191, 441, 735
Hsp92II	CATG	5 cut(s)	137, 527, 685, 763, 799
HspAI	GCGC	1 cut(s)	167
KpnI	GGTACC	1 cut(s)	105
Kzo9I	GATC	8 cut(s)	7, 153, 330, 343, 409, 501, 655, 738
LmnI	GCTCC	1 cut(s)	799
Lsp1109I	GCAGC	3 cut(s)	176, 280, 283
LweI	GCATC	3 cut(s)	498, 562, 795
MabI	ACCWGGT	1 cut(s)	661
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	8 cut(s)	9, 155, 332, 345, 411, 503, 657, 740
MboI	GATC	8 cut(s)	7, 153, 330, 343, 409, 501, 655, 738
MboII	GAAGA	2 cut(s)	163, 385
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	5 cut(s)	84, 201, 392, 698, 707
MlyI	GAGTC	1 cut(s)	607
MmeI	TCCRAC	2 cut(s)	378, 532
MnlI	CCTC	5 cut(s)	115, 180, 358, 424, 603
Mph1103I	ATGCAT	1 cut(s)	577
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	2 cut(s)	14, 21
MslI	CAYNNNNRTG	1 cut(s)	794
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	2 cut(s)	61, 781
MspR9I	CCNGG	3 cut(s)	61, 494, 663
Mva1269I	GAATGC	1 cut(s)	575
MvaI	CCWGG	2 cut(s)	494, 663
MwoI	GCNNNNNNNGC	3 cut(s)	305, 486, 792
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	8 cut(s)	7, 153, 330, 343, 409, 501, 655, 738
NlaIII	CATG	5 cut(s)	137, 527, 685, 763, 799
NlaIV	GGNNCC	2 cut(s)	103, 142
NsiI	ATGCAT	1 cut(s)	577
NspI	RCATGY	2 cut(s)	137, 763
PagI	TCATGA	1 cut(s)	523
PciI	ACATGT	1 cut(s)	133
PctI	GAATGC	1 cut(s)	575
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	1 cut(s)	777
PkrI	GCNGC	3 cut(s)	166, 295, 298
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
PscI	ACATGT	1 cut(s)	133
PshBI	ATTAAT	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	492, 661
PspGI	CCWGG	2 cut(s)	492, 661
PspN4I	GGNNCC	2 cut(s)	103, 142
PstI	CTGCAG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	655
RsaI	GTAC	7 cut(s)	37, 103, 208, 546, 625, 680, 758
RsaNI	GTAC	7 cut(s)	36, 102, 207, 545, 624, 679, 757
RseI	CAYNNNNRTG	1 cut(s)	794
SaqAI	TTAA	2 cut(s)	14, 21
SatI	GCNGC	3 cut(s)	165, 294, 297
Sau3AI	GATC	8 cut(s)	7, 153, 330, 343, 409, 501, 655, 738
SchI	GAGTC	1 cut(s)	607
ScrFI	CCNGG	3 cut(s)	61, 494, 663
SduI	GDGCHC	1 cut(s)	482
SetI	ASST	7 cut(s)	107, 214, 307, 424, 435, 442, 664
SexAI	ACCWGGT	1 cut(s)	661
SfaNI	GCATC	3 cut(s)	498, 562, 795
SfcI	CTRYAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	794
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	5 cut(s)	84, 201, 392, 698, 707
SsiI	CCGC	4 cut(s)	198, 299, 649, 793
StyD4I	CCNGG	3 cut(s)	59, 492, 661
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	127, 226
TasI	AATT	5 cut(s)	84, 201, 392, 698, 707
TatI	WGTACW	4 cut(s)	206, 544, 678, 756
TfiI	GAWTC	1 cut(s)	777
Tru1I	TTAA	2 cut(s)	14, 21
Tru9I	TTAA	2 cut(s)	14, 21
TscAI	CASTG	3 cut(s)	121, 130, 487
TseI	GCWGC	3 cut(s)	164, 293, 296
TspDTI	ATGAA	5 cut(s)	243, 405, 512, 608, 698
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	3 cut(s)	121, 130, 487
Vha464I	CTTAAG	1 cut(s)	13
VneI	GTGCAC	1 cut(s)	478
VspI	ATTAAT	1 cut(s)	21
XapI	RAATTY	3 cut(s)	201, 392, 707
XceI	RCATGY	2 cut(s)	137, 763
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	519
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.