RchiOBHm_Chr1g0331561

alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
21402000 .. 21405189
3190 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56058

Sequence Viewer

Length: 1146 bp
ATGTCCAACAGTACTGCTGGCAAGGTGATCAAGTGCAAAGCTGCGGTAGCCTGGGAAGCTGGGAAGCCGCTGGTTATTGAGGAAGTGGAGGTGGCACCACCCCAGAAACATGAAGTACGCTTGAAGATCCTCTTTACGGCTCTATGCCACACTGATGTATACTTCTGGGAAGCAAAGGGACAAAATCCACTGTTCCCTCGGATTTTTGGTCATGAAGCTGGAGGAATCGTGGAAAGCGTAGGTGAGGGTGTAACTGAACTCCAACCGGGAGACCATGTCCTCCCGGTGTTCACCGGAGAATGCAAGGAGTGCGCACATTGTAAGTCAGAGGAAAGCAACATGTGTGATCTCCTAAGGATTAATACCGACAGGGGTACTATGCTCAATGATGGCCAGACCCGGTTTTCCAAGGATGGAAAGCCAATTTATCACTTTGTTGGTACCTCTACATTCAGTGAATACACTGTTTCACATGTTGGTTCCGTTGCGAAGATCAACCCTGCAGCGCCTCTTGACAAAGTTTGTGTTCTTAGTTGCGGAATTTGTACAGGTTTTGGTGCTACTGTAAATGTTGCAAAGCCGAAAAAGGGTTCATCTGTTGCAATTTTCGGATTGGGTGCTGTTGGTCTTGCTGCTGCGGAAGGTGCAAGGGTTTCTGGGGCTTCAAGGATCATTGGGGTTGATCTGAACTCCAACCGATTTGAGGAAGCCAAGAAGTTTGGGGTGAATGAATTTGTGAATCCAAAAGATCATAACAAACCTGTTCAGGAGGTGATAGCTGAGATGACCAATGGTGGAGTTGATAGGAGTGTTGAGTGCACTGGAAGCATCCAGGCTATGATCTCTGCCTTTGAATGTGTTCATGATGGTTGGGGAGTTGCTGTACTTGTTGGAGTGCCAAACAAAGACGATGCGTTCAAAACCCATCCGATGAACTTCTTGAATGAGAGGACTCTAAAGGGTACTTTCTATGGTAACTACAAGCCCCGCACCGATCTGCCTTGTGTTGTGGAGAAGTACATGAACAAGGAGATGGAATTGGACAAATTTATCACTCACTCTGTTCCTTTCTCTGAGATCAACAAGGCATTTGAGTACATGCTGGCAGGACAGGGAATCCGGTGCATCATCCGCATGGAGCATTAG

Protein Analysis

381

Amino Acids

41.44

Weight (kDa)

6.33

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 36 - 165 2.5e-19 Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C PF16912 198 - 366 8.8e-06 Glucose dehydrogenase C-terminus
ADH_zinc_N PF00107 207 - 338 8.6e-27 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 313
Acc65I GGTACC 1 cut(s) 440
AccB1I GGYRCC 2 cut(s) 94, 440
AccI GTMKAC 1 cut(s) 159
AciI CCGC 6 cut(s) 44, 68, 537, 638, 988, 1132
AclWI GGATC 2 cut(s) 121, 677
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 3 cut(s) 540, 731, 1046
AfaI GTAC 9 cut(s) 13, 117, 376, 442, 547, 885, 964, 1019, 1097
AfiI CCNNNNNNNGG 3 cut(s) 136, 587, 703
AflIII ACRYGT 2 cut(s) 339, 472
AgsI TTSAA 5 cut(s) 124, 666, 854, 919, 943
AjnI CCWGG 2 cut(s) 50, 831
AluBI AGCT 4 cut(s) 41, 59, 218, 779
AluI AGCT 4 cut(s) 41, 59, 218, 779
Alw21I GWGCWC 1 cut(s) 821
Alw26I GTCTC 1 cut(s) 264
Alw44I GTGCAC 1 cut(s) 817
AlwI GGATC 2 cut(s) 121, 677
AoxI GGCC 1 cut(s) 391
ApaLI GTGCAC 1 cut(s) 817
ApeKI GCWGC 4 cut(s) 41, 503, 632, 635
ApoI RAATTY 3 cut(s) 540, 731, 1046
AseI ATTAAT 1 cut(s) 360
Asp700I GAANNNNTTC 1 cut(s) 858
Asp718I GGTACC 1 cut(s) 440
AspLEI GCGC 2 cut(s) 314, 508
AsuC2I CCSGG 3 cut(s) 267, 284, 400
AsuHPI GGTGA 5 cut(s) 37, 254, 283, 736, 784
AxyI CCTNAGG 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 821
BalI TGGCCA 1 cut(s) 393
BanI GGYRCC 2 cut(s) 94, 440
Bbv12I GWGCWC 1 cut(s) 821
BbvI GCAGC 4 cut(s) 28, 515, 619, 622
BccI CCATC 5 cut(s) 383, 407, 860, 933, 1027
BceAI ACGGC 1 cut(s) 153
BciT130I CCWGG 2 cut(s) 52, 833
BclI TGATCA 1 cut(s) 27
BcnI CCSGG 3 cut(s) 267, 284, 400
BcoDI GTCTC 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 501
BfoI RGCGCY 1 cut(s) 509
BisI GCNGC 5 cut(s) 42, 68, 504, 633, 636
BlsI GCNGC 5 cut(s) 43, 69, 505, 634, 637
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 5 cut(s) 52, 267, 284, 400, 833
BmiI GGNNCC 3 cut(s) 96, 442, 481
BmrFI CCNGG 5 cut(s) 52, 267, 284, 400, 833
BmsI GCATC 3 cut(s) 837, 901, 1134
BpmI CTGGAG 1 cut(s) 240
BpuMI CCSGG 3 cut(s) 267, 284, 400
BsaI GGTCTC 1 cut(s) 264
BsaJI CCNNGG 3 cut(s) 51, 197, 408
BsaWI WCCGGW 2 cut(s) 293, 1119
BsaXI ACNNNNNCTCC 6 cut(s) 213, 243, 261, 291, 867, 897
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 587, 703
Bse1I ACTGG 1 cut(s) 826
Bse21I CCTNAGG 1 cut(s) 353
BseBI CCWGG 2 cut(s) 52, 833
BseDI CCNNGG 3 cut(s) 51, 197, 408
BseGI GGATG 4 cut(s) 418, 828, 925, 1128
BseLI CCNNNNNNNGG 3 cut(s) 136, 587, 703
BseMII CTCAG 2 cut(s) 771, 1065
BseNI ACTGG 1 cut(s) 826
BseSI GKGCMC 1 cut(s) 821
BseXI GCAGC 4 cut(s) 28, 515, 619, 622
BseYI CCCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 393
BshNI GGYRCC 2 cut(s) 94, 440
BsiHKAI GWGCWC 1 cut(s) 821
BsiSI CCGG 5 cut(s) 266, 284, 294, 400, 1120
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 3 cut(s) 136, 587, 703
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 1 cut(s) 393
Bso31I GGTCTC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 821
Bsp1407I TGTACA 1 cut(s) 545
BspACI CCGC 6 cut(s) 44, 68, 537, 638, 988, 1132
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 2 cut(s) 772, 1066
BspHI TCATGA 2 cut(s) 211, 862
BspLI GGNNCC 3 cut(s) 96, 442, 481
BspMAI CTGCAG 1 cut(s) 505
BspPI GGATC 2 cut(s) 121, 677
BspT107I GGYRCC 2 cut(s) 94, 440
BspTNI GGTCTC 1 cut(s) 264
BsrGI TGTACA 1 cut(s) 545
BsrI ACTGG 1 cut(s) 826
BssECI CCNNGG 3 cut(s) 51, 197, 408
BssNAI GTATAC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 408
Bst1107I GTATAC 1 cut(s) 160
Bst2UI CCWGG 2 cut(s) 52, 833
Bst4CI ACNGT 4 cut(s) 11, 192, 466, 565
BstAPI GCANNNNNTGC 1 cut(s) 309
BstAUI TGTACA 1 cut(s) 545
BstC8I GCNNGC 2 cut(s) 19, 1104
BstDEI CTNAG 4 cut(s) 353, 530, 780, 1074
BstF5I GGATG 4 cut(s) 418, 828, 925, 1128
BstH2I RGCGCY 1 cut(s) 509
BstHHI GCGC 2 cut(s) 314, 508
BstMAI GTCTC 1 cut(s) 264
BstMWI GCNNNNNNNGC 6 cut(s) 47, 56, 309, 644, 825, 1131
BstNI CCWGG 2 cut(s) 52, 833
BstNSI RCATGY 3 cut(s) 343, 476, 1102
BstSCI CCNGG 5 cut(s) 50, 265, 282, 398, 831
BstSFI CTRYAG 1 cut(s) 501
BstSLI GKGCMC 1 cut(s) 821
BstV1I GCAGC 4 cut(s) 28, 515, 619, 622
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BstZ17I GTATAC 1 cut(s) 160
Bsu36I CCTNAGG 1 cut(s) 353
BsuRI GGCC 1 cut(s) 393
BtsCI GGATG 4 cut(s) 418, 828, 925, 1128
BtsIMutI CAGTG 5 cut(s) 150, 188, 460, 462, 819
Cac8I GCNNGC 2 cut(s) 19, 1104
CciI TCATGA 2 cut(s) 211, 862
CfoI GCGC 2 cut(s) 314, 508
Csp6I GTAC 9 cut(s) 12, 116, 375, 441, 546, 884, 963, 1018, 1096
CviAII CATG 9 cut(s) 110, 212, 275, 340, 473, 863, 1021, 1099, 1135
CviQI GTAC 9 cut(s) 12, 116, 375, 441, 546, 884, 963, 1018, 1096
DdeI CTNAG 4 cut(s) 353, 530, 780, 1074
EaeI YGGCCR 1 cut(s) 391
Eco130I CCWWGG 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 264
Eco81I CCTNAGG 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 50, 831
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 9 cut(s) 113, 215, 278, 343, 476, 866, 1024, 1102, 1138
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FaqI GGGAC 1 cut(s) 192
FatI CATG 9 cut(s) 109, 211, 274, 339, 472, 862, 1020, 1098, 1134
FauI CCCGC 1 cut(s) 995
FbaI TGATCA 1 cut(s) 27
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 5 cut(s) 42, 68, 504, 633, 636
FokI GGATG 4 cut(s) 425, 815, 912, 1115
Fsp4HI GCNGC 5 cut(s) 42, 68, 504, 633, 636
FspAI RTGCGCAY 1 cut(s) 313
FspI TGCGCA 1 cut(s) 313
GlaI GCGC 2 cut(s) 313, 507
GluI GCNGC 5 cut(s) 42, 68, 504, 633, 636
GsaI CCCAGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 240
HaeII RGCGCY 1 cut(s) 509
HaeIII GGCC 1 cut(s) 393
HapII CCGG 5 cut(s) 266, 284, 294, 400, 1120
HhaI GCGC 2 cut(s) 314, 508
Hin1II CATG 9 cut(s) 113, 215, 278, 343, 476, 866, 1024, 1102, 1138
Hin6I GCGC 2 cut(s) 312, 506
HinP1I GCGC 2 cut(s) 312, 506
HinfI GANTC 4 cut(s) 225, 739, 952, 1116
HpaII CCGG 5 cut(s) 266, 284, 294, 400, 1120
HphI GGTGA 5 cut(s) 37, 254, 283, 736, 784
Hpy166II GTNNAC 3 cut(s) 160, 291, 819
Hpy188I TCNGA 6 cut(s) 201, 328, 611, 687, 930, 1075
Hpy188III TCNNGA 5 cut(s) 212, 512, 767, 863, 940
Hpy8I GTNNAC 3 cut(s) 160, 291, 819
HpyAV CCTTC 1 cut(s) 635
HpyCH4III ACNGT 4 cut(s) 11, 192, 466, 565
HpyCH4V TGCA 8 cut(s) 36, 303, 503, 575, 602, 647, 819, 1125
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 56, 309, 644, 825, 1131
HpyF3I CTNAG 4 cut(s) 353, 530, 780, 1074
Hsp92II CATG 9 cut(s) 113, 215, 278, 343, 476, 866, 1024, 1102, 1138
HspAI GCGC 2 cut(s) 312, 506
KpnI GGTACC 1 cut(s) 444
Ksp22I TGATCA 1 cut(s) 27
LmnI GCTCC 1 cut(s) 1138
Lsp1109I GCAGC 4 cut(s) 28, 515, 619, 622
LweI GCATC 3 cut(s) 837, 901, 1134
MaeIII GTNAC 2 cut(s) 250, 974
MboII GAAGA 2 cut(s) 136, 502
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 821
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 6 cut(s) 423, 540, 603, 731, 1037, 1046
MluNI TGGCCA 1 cut(s) 393
MlyI GAGTC 1 cut(s) 946
MmeI TCCRAC 4 cut(s) 30, 286, 717, 871
Mox20I TGGCCA 1 cut(s) 393
MroXI GAANNNNTTC 1 cut(s) 858
MscI TGGCCA 1 cut(s) 393
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 2 cut(s) 153, 1133
Msp20I TGGCCA 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 70
MspI CCGG 5 cut(s) 266, 284, 294, 400, 1120
MspR9I CCNGG 5 cut(s) 52, 267, 284, 400, 833
Mva1269I GAATGC 1 cut(s) 305
MvaI CCWGG 2 cut(s) 52, 833
MwoI GCNNNNNNNGC 6 cut(s) 47, 56, 309, 644, 825, 1131
NciI CCSGG 3 cut(s) 267, 284, 400
NlaIII CATG 9 cut(s) 113, 215, 278, 343, 476, 866, 1024, 1102, 1138
NlaIV GGNNCC 3 cut(s) 96, 442, 481
NsbI TGCGCA 1 cut(s) 313
NspI RCATGY 3 cut(s) 343, 476, 1102
PagI TCATGA 2 cut(s) 211, 862
PciI ACATGT 2 cut(s) 339, 472
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 858
PfeI GAWTC 3 cut(s) 225, 739, 1116
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 5 cut(s) 43, 69, 505, 634, 637
PleI GAGTC 1 cut(s) 946
PpsI GAGTC 1 cut(s) 946
PscI ACATGT 2 cut(s) 339, 472
PshBI ATTAAT 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 50, 831
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 2 cut(s) 50, 831
PspN4I GGNNCC 3 cut(s) 96, 442, 481
PstI CTGCAG 1 cut(s) 505
PsuI RGATCY 1 cut(s) 126
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 9 cut(s) 13, 117, 376, 442, 547, 885, 964, 1019, 1097
RsaNI GTAC 9 cut(s) 12, 116, 375, 441, 546, 884, 963, 1018, 1096
RseI CAYNNNNRTG 2 cut(s) 153, 1133
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 5 cut(s) 42, 68, 504, 633, 636
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 1 cut(s) 946
ScrFI CCNGG 5 cut(s) 52, 267, 284, 400, 833
SduI GDGCHC 1 cut(s) 821
SfaNI GCATC 3 cut(s) 837, 901, 1134
SfcI CTRYAG 1 cut(s) 501
SmiMI CAYNNNNRTG 2 cut(s) 153, 1133
Sse9I AATT 6 cut(s) 423, 540, 603, 731, 1037, 1046
SsiI CCGC 6 cut(s) 44, 68, 537, 638, 988, 1132
StyD4I CCNGG 5 cut(s) 50, 265, 282, 398, 831
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 4 cut(s) 11, 192, 466, 565
TasI AATT 6 cut(s) 423, 540, 603, 731, 1037, 1046
TatI WGTACW 5 cut(s) 11, 545, 883, 1017, 1095
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 3 cut(s) 225, 739, 1116
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 5 cut(s) 157, 195, 460, 469, 826
TseI GCWGC 4 cut(s) 41, 503, 632, 635
TspDTI ATGAA 7 cut(s) 126, 228, 582, 744, 851, 947, 1037
TspGWI ACGGA 1 cut(s) 472
TspRI CASTG 5 cut(s) 157, 195, 460, 469, 826
Tth111I GACNNNGTC 1 cut(s) 275
VneI GTGCAC 1 cut(s) 817
VspI ATTAAT 1 cut(s) 360
XapI RAATTY 3 cut(s) 540, 731, 1046
XceI RCATGY 3 cut(s) 343, 476, 1102
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 858
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.