Rw6G019040

alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
37926358 .. 37929530
3173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G019040.1

Sequence Viewer

Length: 1143 bp
ATGTCCAACACTGCTGGCAAGGTGATCAAGTGCAAAGCTGCGGTCGCCTGGGAAGCTGGGAAGCCGCTGGTTATTGAGGAAGTGGAGGTGGCACCACCACAGAAACATGAAGTACGCTTGAAGATCCTCTTTACCTCTCTGTGCCACACTGATGTATACTTCTGGGAAGCAAAGGGACAAAATCCACTGTTCCCTCGGATTTTCGGTCATGAAGCTGGAGGAATAGTGGAAAGCGTAGGTGAGGGTGTAACTGAACTCCAACCGGGAGACCATGTCCTCCCGGTGTTCACTGGAGAATGCAAGGAGTGCTCACATTGTAAGTCAGAGGAAAGCAACTTGTGTGATCTCCTAAGGATTAATACTGACAGGGGTACTATGCTCAATGACGGCCAGACCAGGTTTTCCAAGGATGGAAAGCCAATTTATCACTTTGTTGGTACTTCTACATTCAGTGAATACACTGTTTCACATGTTGGTTCTGTTGCGAAGATCAACCCTGCAGCGCCTCTTGACAAAGTTTGTGTTCTTAGTTGTGGAATTTGTACAGGTTTTGGTGCAACTGTAAATGTTGCAAAGCCGAAAAAGGGTTCATCTGTTGCCATTTTTGGATTGGGTGCTGTTGGTCTTGCTGCTGCAGAAGGTGCAAGGGTTTCTGGGGCTTCAAGGATCATTGGAGTTGATCTGAACTCCAACCGATTTGAGGAAGCCAAGAAGTTTGGGGTGAATGAATTTGTGAATCCAAAAGATCATAAGAAACCCGTTCAGGAGGTGATAGCTGAGATGACCAATGGTGGAGTTGATAGGAGTGTTGAGTGCACTGGAAGCATCCAGGCTATGATCTCTGCTTTTGAATGTGTTCATGATGGTTGGGGGGTTGCTGTACTTGTTGGAGTGCCAAACAAAGACGATGCATTCAAAACCCATCCGATAAACTTCTTGAATGAGAGGACTCTGAAGGGGACTTTCTATGGTAACTACAAGCCCCGCACCGATCTACCTGGTGTTGTGGAGAAGTATATGAACAAGGAGATGGAATTGGACAAATTTATCACTCACTCTGTTCCTTTCTCTGAGATCAACAAGGCATTTGAGTACATGCTGGCAGGACAGGGAATCCGGTGCATCATCCGCATGGAGCACTAG

Protein Analysis

380

Amino Acids

41.31

Weight (kDa)

6.47

Isoelectric Point (pI)

30.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 35 - 164 3.9e-19 Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C PF16912 197 - 365 9.6e-06 Glucose dehydrogenase C-terminus
ADH_zinc_N PF00107 206 - 337 5e-27 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 156
AciI CCGC 4 cut(s) 41, 65, 985, 1129
AclWI GGATC 2 cut(s) 118, 674
AcoI YGGCCR 1 cut(s) 388
AcsI RAATTY 3 cut(s) 537, 728, 1043
AcuI CTGAAG 1 cut(s) 974
AfaI GTAC 6 cut(s) 114, 373, 439, 544, 882, 1094
AfiI CCNNNNNNNGG 2 cut(s) 584, 700
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 5 cut(s) 121, 663, 851, 916, 940
AjnI CCWGG 4 cut(s) 47, 395, 828, 997
AluBI AGCT 4 cut(s) 38, 56, 215, 776
AluI AGCT 4 cut(s) 38, 56, 215, 776
Alw21I GWGCWC 3 cut(s) 311, 818, 1140
Alw26I GTCTC 1 cut(s) 261
Alw44I GTGCAC 1 cut(s) 814
AlwI GGATC 2 cut(s) 118, 674
AoxI GGCC 1 cut(s) 388
ApaLI GTGCAC 1 cut(s) 814
ApeKI GCWGC 4 cut(s) 38, 500, 629, 632
ApoI RAATTY 3 cut(s) 537, 728, 1043
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
AseI ATTAAT 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 855
AspLEI GCGC 1 cut(s) 505
AsuC2I CCSGG 2 cut(s) 264, 281
AsuHPI GGTGA 4 cut(s) 34, 251, 733, 781
AxyI CCTNAGG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 818
BanI GGYRCC 1 cut(s) 91
Bbv12I GWGCWC 3 cut(s) 311, 818, 1140
BbvI GCAGC 4 cut(s) 25, 512, 616, 619
BccI CCATC 4 cut(s) 404, 857, 930, 1024
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 4 cut(s) 49, 397, 830, 999
BclI TGATCA 1 cut(s) 24
BcnI CCSGG 2 cut(s) 264, 281
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 1141
BfmI CTRYAG 2 cut(s) 498, 633
BfoI RGCGCY 1 cut(s) 506
BisI GCNGC 5 cut(s) 39, 65, 501, 630, 633
BlsI GCNGC 5 cut(s) 40, 66, 502, 631, 634
Bme1390I CCNGG 6 cut(s) 49, 264, 281, 397, 830, 999
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 6 cut(s) 49, 264, 281, 397, 830, 999
BmsI GCATC 3 cut(s) 834, 898, 1131
BpmI CTGGAG 2 cut(s) 237, 312
BpuMI CCSGG 2 cut(s) 264, 281
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 3 cut(s) 48, 194, 405
BsaWI WCCGGW 1 cut(s) 1116
BsaXI ACNNNNNCTCC 4 cut(s) 210, 240, 258, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 584, 700
Bse1I ACTGG 2 cut(s) 295, 823
Bse21I CCTNAGG 1 cut(s) 350
BseBI CCWGG 4 cut(s) 49, 397, 830, 999
BseDI CCNNGG 3 cut(s) 48, 194, 405
BseGI GGATG 4 cut(s) 415, 825, 922, 1125
BseLI CCNNNNNNNGG 2 cut(s) 584, 700
BseMII CTCAG 2 cut(s) 768, 1062
BseNI ACTGG 2 cut(s) 295, 823
BseSI GKGCMC 1 cut(s) 818
BseXI GCAGC 4 cut(s) 25, 512, 616, 619
BseYI CCCAGC 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 390
BshNI GGYRCC 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 3 cut(s) 311, 818, 1140
BsiSI CCGG 3 cut(s) 263, 281, 1117
BslFI GGGAC 2 cut(s) 189, 973
BslI CCNNNNNNNGG 2 cut(s) 584, 700
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 2 cut(s) 189, 973
BsmI GAATGC 2 cut(s) 302, 911
BsnI GGCC 1 cut(s) 390
Bso31I GGTCTC 1 cut(s) 261
Bsp1286I GDGCHC 3 cut(s) 311, 818, 1140
Bsp1407I TGTACA 1 cut(s) 542
BspACI CCGC 4 cut(s) 41, 65, 985, 1129
BspANI GGCC 1 cut(s) 390
BspCNI CTCAG 2 cut(s) 769, 1063
BspHI TCATGA 2 cut(s) 208, 859
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 2 cut(s) 502, 637
BspPI GGATC 2 cut(s) 118, 674
BspT107I GGYRCC 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 542
BsrI ACTGG 2 cut(s) 295, 823
BssECI CCNNGG 3 cut(s) 48, 194, 405
BssNAI GTATAC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 405
Bst1107I GTATAC 1 cut(s) 157
Bst2UI CCWGG 4 cut(s) 49, 397, 830, 999
Bst4CI ACNGT 3 cut(s) 189, 463, 562
BstAPI GCANNNNNTGC 2 cut(s) 306, 641
BstAUI TGTACA 1 cut(s) 542
BstC8I GCNNGC 2 cut(s) 16, 1101
BstDEI CTNAG 4 cut(s) 350, 527, 777, 1071
BstF5I GGATG 4 cut(s) 415, 825, 922, 1125
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 1 cut(s) 505
BstMAI GTCTC 1 cut(s) 261
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 6 cut(s) 44, 53, 306, 641, 822, 1128
BstNI CCWGG 4 cut(s) 49, 397, 830, 999
BstNSI RCATGY 2 cut(s) 473, 1099
BstSCI CCNGG 6 cut(s) 47, 262, 279, 395, 828, 997
BstSFI CTRYAG 2 cut(s) 498, 633
BstSLI GKGCMC 1 cut(s) 818
BstV1I GCAGC 4 cut(s) 25, 512, 616, 619
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BstZ17I GTATAC 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 1 cut(s) 390
BtsCI GGATG 4 cut(s) 415, 825, 922, 1125
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 7 cut(s) 9, 147, 185, 288, 457, 459, 816
Cac8I GCNNGC 2 cut(s) 16, 1101
CciI TCATGA 2 cut(s) 208, 859
CfoI GCGC 1 cut(s) 505
CsiI ACCWGGT 2 cut(s) 395, 997
Csp6I GTAC 6 cut(s) 113, 372, 438, 543, 881, 1093
CviAII CATG 7 cut(s) 107, 209, 272, 470, 860, 1096, 1132
CviQI GTAC 6 cut(s) 113, 372, 438, 543, 881, 1093
DdeI CTNAG 4 cut(s) 350, 527, 777, 1071
EaeI YGGCCR 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 974
Eco81I CCTNAGG 1 cut(s) 350
EcoRII CCWGG 4 cut(s) 47, 395, 828, 997
EcoT14I CCWWGG 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 913
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 7 cut(s) 110, 212, 275, 473, 863, 1099, 1135
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 2 cut(s) 189, 973
FatI CATG 7 cut(s) 106, 208, 271, 469, 859, 1095, 1131
FauI CCCGC 1 cut(s) 992
FbaI TGATCA 1 cut(s) 24
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 5 cut(s) 39, 65, 501, 630, 633
FokI GGATG 4 cut(s) 422, 812, 909, 1112
Fsp4HI GCNGC 5 cut(s) 39, 65, 501, 630, 633
FspBI CTAG 1 cut(s) 1141
GlaI GCGC 1 cut(s) 504
GluI GCNGC 5 cut(s) 39, 65, 501, 630, 633
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 2 cut(s) 237, 312
HaeII RGCGCY 1 cut(s) 506
HaeIII GGCC 1 cut(s) 390
HapII CCGG 3 cut(s) 263, 281, 1117
HhaI GCGC 1 cut(s) 505
Hin1II CATG 7 cut(s) 110, 212, 275, 473, 863, 1099, 1135
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HinfI GANTC 3 cut(s) 736, 949, 1113
HpaII CCGG 3 cut(s) 263, 281, 1117
HphI GGTGA 4 cut(s) 34, 251, 733, 781
Hpy166II GTNNAC 3 cut(s) 157, 288, 816
Hpy188I TCNGA 6 cut(s) 198, 325, 684, 927, 954, 1072
Hpy188III TCNNGA 5 cut(s) 209, 509, 764, 860, 937
Hpy8I GTNNAC 3 cut(s) 157, 288, 816
HpyAV CCTTC 2 cut(s) 632, 949
HpyCH4III ACNGT 3 cut(s) 189, 463, 562
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 53, 306, 641, 822, 1128
HpyF3I CTNAG 4 cut(s) 350, 527, 777, 1071
Hsp92II CATG 7 cut(s) 110, 212, 275, 473, 863, 1099, 1135
HspAI GCGC 1 cut(s) 503
Ksp22I TGATCA 1 cut(s) 24
LmnI GCTCC 1 cut(s) 1135
Lsp1109I GCAGC 4 cut(s) 25, 512, 616, 619
LweI GCATC 3 cut(s) 834, 898, 1131
MabI ACCWGGT 2 cut(s) 395, 997
MaeI CTAG 1 cut(s) 1141
MaeIII GTNAC 2 cut(s) 247, 971
MboII GAAGA 2 cut(s) 133, 499
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 3 cut(s) 311, 818, 1140
MluCI AATT 5 cut(s) 420, 537, 728, 1034, 1043
MlyI GAGTC 1 cut(s) 943
MmeI TCCRAC 4 cut(s) 30, 283, 714, 868
Mph1103I ATGCAT 1 cut(s) 913
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 2 cut(s) 150, 1130
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 3 cut(s) 263, 281, 1117
MspR9I CCNGG 6 cut(s) 49, 264, 281, 397, 830, 999
Mva1269I GAATGC 2 cut(s) 302, 911
MvaI CCWGG 4 cut(s) 49, 397, 830, 999
MwoI GCNNNNNNNGC 6 cut(s) 44, 53, 306, 641, 822, 1128
NciI CCSGG 2 cut(s) 264, 281
NlaIII CATG 7 cut(s) 110, 212, 275, 473, 863, 1099, 1135
NlaIV GGNNCC 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 913
NspI RCATGY 2 cut(s) 473, 1099
PagI TCATGA 2 cut(s) 208, 859
PciI ACATGT 1 cut(s) 469
PctI GAATGC 2 cut(s) 302, 911
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 2 cut(s) 736, 1113
PflFI GACNNNGTC 1 cut(s) 272
PkrI GCNGC 5 cut(s) 40, 66, 502, 631, 634
PleI GAGTC 1 cut(s) 943
PpsI GAGTC 1 cut(s) 943
PscI ACATGT 1 cut(s) 469
PshBI ATTAAT 1 cut(s) 357
Psp6I CCWGG 4 cut(s) 47, 395, 828, 997
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 4 cut(s) 47, 395, 828, 997
PspN4I GGNNCC 1 cut(s) 93
PstI CTGCAG 2 cut(s) 502, 637
PsuI RGATCY 1 cut(s) 123
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 6 cut(s) 114, 373, 439, 544, 882, 1094
RsaNI GTAC 6 cut(s) 113, 372, 438, 543, 881, 1093
RseI CAYNNNNRTG 2 cut(s) 150, 1130
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 5 cut(s) 39, 65, 501, 630, 633
SchI GAGTC 1 cut(s) 943
ScrFI CCNGG 6 cut(s) 49, 264, 281, 397, 830, 999
SduI GDGCHC 3 cut(s) 311, 818, 1140
SexAI ACCWGGT 2 cut(s) 395, 997
SfaNI GCATC 3 cut(s) 834, 898, 1131
SfcI CTRYAG 2 cut(s) 498, 633
SmiMI CAYNNNNRTG 2 cut(s) 150, 1130
Sse9I AATT 5 cut(s) 420, 537, 728, 1034, 1043
SsiI CCGC 4 cut(s) 41, 65, 985, 1129
SspMI CTAG 1 cut(s) 1141
StyD4I CCNGG 6 cut(s) 47, 262, 279, 395, 828, 997
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 3 cut(s) 189, 463, 562
TaqII GACCGA 1 cut(s) 194
TasI AATT 5 cut(s) 420, 537, 728, 1034, 1043
TatI WGTACW 3 cut(s) 542, 880, 1092
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 2 cut(s) 736, 1113
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 7 cut(s) 16, 154, 192, 295, 457, 466, 823
TseI GCWGC 4 cut(s) 38, 500, 629, 632
TspDTI ATGAA 6 cut(s) 123, 225, 579, 741, 848, 1034
TspRI CASTG 7 cut(s) 16, 154, 192, 295, 457, 466, 823
Tth111I GACNNNGTC 1 cut(s) 272
VneI GTGCAC 1 cut(s) 814
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 3 cut(s) 537, 728, 1043
XceI RCATGY 2 cut(s) 473, 1099
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 855
XspI CTAG 1 cut(s) 1141
Zsp2I ATGCAT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.