RchiOBHm_Chr6g0277311

alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
39776742 .. 39780076
3335 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24877

Sequence Viewer

Length: 1143 bp
ATGTCCAACACTGCTGGCAAGGTGATCAAGTGCAAAGCTGCGGTGGCCTGGGAAGCCGGGAAGCCGCTGGTTATTGAGGAAGTGGAGGTGGCACCACCACAGAAACATGAAGTACGCTTGAAGATCCTCTTTACCGCTCTGTGCCACACTGATGTATACTTCTGGGAAGCAAAGGGACAAAATCCACTGTTCCCTCGGATTTTAGGTCATGAAGCTGGAGGAATCGTGGAAAGCGTAGGTGAGGGTGTAACTGAACTCAAACCGGGAGACCATGTCCTCCCGGTGTTCACTGGAGAATGCAAGGAGTGCGCACATTGTAAATCAGAGGAAAGCAACATGTGTGATCTCCTAAGGATTAATACCGACAGGGGTACTATGCTCAATGATGGCAAGAGCAGGTTTTCCAAGGATGGAAAGCCAATTTATCACTTTGTTGGTACCTCTACATTCAGTGAATACACTGTTTCACATGTTGGTTCCGTTGCGAAGATCAACCCTGCAGCACCTCTTGACAAAGTTTGTGTTCTTAGTTGCGGAATTTGTACAGGTTTTGGTGCAACTGTAAATGTTGCAAAGCCGAAAAAGGGTTCATCTGTTGCCATTTTCGGATTGGGTGCTGTTGGTCTTGCTGCTGCGGAAGGTGCACGGGTTTCTGGGGCTGCAAGGATCATCGGAGTTGATCTGAACTCCAACCGATTTGAGGAAGCTAAGAAGTTTGGGGTGAATGAATTTGTGAATCCAAAAGATCATAACAAACCTGTTCAGGAGGTGATTGCTGAGATGACCAATGGTGGAGTTGATCGGAGTGTTGAGTGCACTGGAAGCATCCAGGCTATGATATCTGCCTTTGAATGTGTTCATGATGGTTGGGGAGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGACACGTTCAAAACCCATCCGGTGAACTTCTTGAATGAGAGGACTCTTAAGGGTACTTTCTATGGTAACTACAAGCCCCGCACTGATCTACCTGGTGTTGTGGAGAAGTACATGAACAAGGAGCTGGAAGTGGACAAATTTATCACTCACTCTGTTTCTTTCTCTGAGATCAACAAGGCATTTGAGTACATGAAGGCAGGACAGGGCATCCGGTGCGTCATCCGCATGGAGCACTAG

Protein Analysis

380

Amino Acids

41.2

Weight (kDa)

6.86

Isoelectric Point (pI)

28.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 35 - 164 7e-20 Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C PF16912 197 - 367 8.4e-06 Glucose dehydrogenase C-terminus
ADH_zinc_N PF00107 206 - 337 5.1e-27 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 310
Acc36I ACCTGC 1 cut(s) 387
Acc65I GGTACC 1 cut(s) 437
AccB1I GGYRCC 2 cut(s) 91, 437
AccBSI CCGCTC 1 cut(s) 137
AccI GTMKAC 1 cut(s) 156
AciI CCGC 7 cut(s) 41, 65, 135, 534, 635, 985, 1129
AclWI GGATC 2 cut(s) 118, 674
AcsI RAATTY 3 cut(s) 537, 728, 1043
AfaI GTAC 8 cut(s) 114, 373, 439, 544, 882, 961, 1016, 1094
AfiI CCNNNNNNNGG 2 cut(s) 584, 700
AflII CTTAAG 1 cut(s) 953
AflIII ACRYGT 3 cut(s) 336, 469, 909
AgsI TTSAA 4 cut(s) 121, 851, 916, 940
AjnI CCWGG 3 cut(s) 47, 828, 997
AluBI AGCT 4 cut(s) 38, 215, 707, 1030
AluI AGCT 4 cut(s) 38, 215, 707, 1030
Alw21I GWGCWC 3 cut(s) 646, 818, 1140
Alw26I GTCTC 1 cut(s) 261
Alw44I GTGCAC 2 cut(s) 642, 814
AlwI GGATC 2 cut(s) 118, 674
AoxI GGCC 1 cut(s) 45
ApaLI GTGCAC 2 cut(s) 642, 814
ApeKI GCWGC 5 cut(s) 38, 500, 629, 632, 659
ApoI RAATTY 3 cut(s) 537, 728, 1043
AseI ATTAAT 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 855
Asp718I GGTACC 1 cut(s) 437
AspLEI GCGC 1 cut(s) 311
AsuC2I CCSGG 3 cut(s) 58, 264, 281
AsuHPI GGTGA 5 cut(s) 34, 251, 733, 781, 940
AxyI CCTNAGG 1 cut(s) 350
BaeGI GKGCMC 2 cut(s) 646, 818
BanI GGYRCC 2 cut(s) 91, 437
Bbv12I GWGCWC 3 cut(s) 646, 818, 1140
BbvI GCAGC 5 cut(s) 25, 512, 616, 619, 646
BccI CCATC 4 cut(s) 380, 404, 857, 930
BciT130I CCWGG 3 cut(s) 49, 830, 999
BclI TGATCA 1 cut(s) 24
BcnI CCSGG 3 cut(s) 58, 264, 281
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 1141
BfmI CTRYAG 1 cut(s) 498
BfrI CTTAAG 1 cut(s) 953
BfuAI ACCTGC 1 cut(s) 387
BisI GCNGC 6 cut(s) 39, 65, 501, 630, 633, 660
BlsI GCNGC 6 cut(s) 40, 66, 502, 631, 634, 661
Bme1390I CCNGG 6 cut(s) 49, 58, 264, 281, 830, 999
BmiI GGNNCC 3 cut(s) 93, 439, 478
BmrFI CCNGG 6 cut(s) 49, 58, 264, 281, 830, 999
BmsI GCATC 2 cut(s) 834, 1122
BpmI CTGGAG 2 cut(s) 237, 312
BpuMI CCSGG 3 cut(s) 58, 264, 281
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 3 cut(s) 48, 194, 405
BsaWI WCCGGW 2 cut(s) 925, 1116
BsaXI ACNNNNNCTCC 6 cut(s) 210, 240, 258, 288, 864, 894
Bsc4I CCNNNNNNNGG 2 cut(s) 584, 700
Bse1I ACTGG 2 cut(s) 295, 823
Bse21I CCTNAGG 1 cut(s) 350
BseBI CCWGG 3 cut(s) 49, 830, 999
BseDI CCNNGG 3 cut(s) 48, 194, 405
BseGI GGATG 5 cut(s) 415, 825, 922, 1113, 1125
BseLI CCNNNNNNNGG 2 cut(s) 584, 700
BseMII CTCAG 2 cut(s) 768, 1062
BseNI ACTGG 2 cut(s) 295, 823
BseSI GKGCMC 2 cut(s) 646, 818
BseXI GCAGC 5 cut(s) 25, 512, 616, 619, 646
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 2 cut(s) 91, 437
BsiHKAI GWGCWC 3 cut(s) 646, 818, 1140
BsiSI CCGG 5 cut(s) 57, 263, 281, 926, 1117
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 584, 700
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 261
Bsp1286I GDGCHC 3 cut(s) 646, 818, 1140
Bsp1407I TGTACA 1 cut(s) 542
BspACI CCGC 7 cut(s) 41, 65, 135, 534, 635, 985, 1129
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 769, 1063
BspHI TCATGA 2 cut(s) 208, 859
BspLI GGNNCC 3 cut(s) 93, 439, 478
BspMAI CTGCAG 1 cut(s) 502
BspMI ACCTGC 1 cut(s) 387
BspPI GGATC 2 cut(s) 118, 674
BspT107I GGYRCC 2 cut(s) 91, 437
BspTI CTTAAG 1 cut(s) 953
BspTNI GGTCTC 1 cut(s) 261
BsrBI CCGCTC 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 542
BsrI ACTGG 2 cut(s) 295, 823
BssECI CCNNGG 3 cut(s) 48, 194, 405
BssNAI GTATAC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 405
Bst1107I GTATAC 1 cut(s) 157
Bst2UI CCWGG 3 cut(s) 49, 830, 999
Bst4CI ACNGT 3 cut(s) 189, 463, 562
BstAFI CTTAAG 1 cut(s) 953
BstAPI GCANNNNNTGC 2 cut(s) 306, 1119
BstAUI TGTACA 1 cut(s) 542
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 5 cut(s) 350, 527, 708, 777, 1071
BstF5I GGATG 5 cut(s) 415, 825, 922, 1113, 1125
BstHHI GCGC 1 cut(s) 311
BstMAI GTCTC 1 cut(s) 261
BstMWI GCNNNNNNNGC 7 cut(s) 44, 53, 306, 641, 822, 1119, 1128
BstNI CCWGG 3 cut(s) 49, 830, 999
BstNSI RCATGY 2 cut(s) 340, 473
BstSCI CCNGG 6 cut(s) 47, 56, 262, 279, 828, 997
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 2 cut(s) 646, 818
BstV1I GCAGC 5 cut(s) 25, 512, 616, 619, 646
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BstZ17I GTATAC 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 5 cut(s) 415, 825, 922, 1113, 1125
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 8 cut(s) 9, 147, 185, 288, 457, 459, 816, 987
BveI ACCTGC 1 cut(s) 387
Cac8I GCNNGC 1 cut(s) 16
CciI TCATGA 2 cut(s) 208, 859
CfoI GCGC 1 cut(s) 311
CseI GACGC 1 cut(s) 1111
CsiI ACCWGGT 1 cut(s) 997
Csp6I GTAC 8 cut(s) 113, 372, 438, 543, 881, 960, 1015, 1093
CviAII CATG 9 cut(s) 107, 209, 272, 337, 470, 860, 1018, 1096, 1132
CviQI GTAC 8 cut(s) 113, 372, 438, 543, 881, 960, 1015, 1093
DdeI CTNAG 5 cut(s) 350, 527, 708, 777, 1071
Eco130I CCWWGG 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 261
Eco32I GATATC 1 cut(s) 840
Eco81I CCTNAGG 1 cut(s) 350
EcoRII CCWGG 3 cut(s) 47, 828, 997
EcoRV GATATC 1 cut(s) 840
EcoT14I CCWWGG 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 9 cut(s) 110, 212, 275, 340, 473, 863, 1021, 1099, 1135
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 189
FatI CATG 9 cut(s) 106, 208, 271, 336, 469, 859, 1017, 1095, 1131
FauI CCCGC 1 cut(s) 992
FbaI TGATCA 1 cut(s) 24
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 6 cut(s) 39, 65, 501, 630, 633, 660
FokI GGATG 5 cut(s) 422, 812, 909, 1100, 1112
Fsp4HI GCNGC 6 cut(s) 39, 65, 501, 630, 633, 660
FspAI RTGCGCAY 1 cut(s) 310
FspBI CTAG 1 cut(s) 1141
FspI TGCGCA 1 cut(s) 310
GlaI GCGC 1 cut(s) 310
GluI GCNGC 6 cut(s) 39, 65, 501, 630, 633, 660
GsuI CTGGAG 2 cut(s) 237, 312
HaeIII GGCC 1 cut(s) 47
HapII CCGG 5 cut(s) 57, 263, 281, 926, 1117
HgaI GACGC 1 cut(s) 1111
HhaI GCGC 1 cut(s) 311
Hin1II CATG 9 cut(s) 110, 212, 275, 340, 473, 863, 1021, 1099, 1135
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 3 cut(s) 222, 736, 949
HpaII CCGG 5 cut(s) 57, 263, 281, 926, 1117
HphI GGTGA 5 cut(s) 34, 251, 733, 781, 940
Hpy166II GTNNAC 6 cut(s) 157, 288, 644, 816, 931, 1039
Hpy188I TCNGA 7 cut(s) 198, 325, 608, 674, 684, 804, 1072
Hpy188III TCNNGA 5 cut(s) 209, 509, 764, 860, 937
Hpy8I GTNNAC 6 cut(s) 157, 288, 644, 816, 931, 1039
HpyAV CCTTC 2 cut(s) 632, 1093
HpyCH4III ACNGT 3 cut(s) 189, 463, 562
HpyCH4IV ACGT 1 cut(s) 911
HpyCH4V TGCA 8 cut(s) 33, 300, 500, 557, 572, 644, 662, 816
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 53, 306, 641, 822, 1119, 1128
HpyF3I CTNAG 5 cut(s) 350, 527, 708, 777, 1071
HpySE526I ACGT 1 cut(s) 911
Hsp92II CATG 9 cut(s) 110, 212, 275, 340, 473, 863, 1021, 1099, 1135
HspAI GCGC 1 cut(s) 309
KpnI GGTACC 1 cut(s) 441
Ksp22I TGATCA 1 cut(s) 24
LmnI GCTCC 2 cut(s) 1027, 1135
Lsp1109I GCAGC 5 cut(s) 25, 512, 616, 619, 646
LweI GCATC 2 cut(s) 834, 1122
MabI ACCWGGT 1 cut(s) 997
MaeI CTAG 1 cut(s) 1141
MaeII ACGT 1 cut(s) 911
MaeIII GTNAC 2 cut(s) 247, 971
MbiI CCGCTC 1 cut(s) 137
MboII GAAGA 2 cut(s) 133, 499
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 3 cut(s) 646, 818, 1140
MluCI AATT 4 cut(s) 420, 537, 728, 1043
MlyI GAGTC 1 cut(s) 943
MmeI TCCRAC 3 cut(s) 30, 714, 868
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 2 cut(s) 357, 954
MslI CAYNNNNRTG 2 cut(s) 150, 1130
MspA1I CMGCKG 1 cut(s) 67
MspCI CTTAAG 1 cut(s) 953
MspI CCGG 5 cut(s) 57, 263, 281, 926, 1117
MspR9I CCNGG 6 cut(s) 49, 58, 264, 281, 830, 999
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 3 cut(s) 49, 830, 999
MwoI GCNNNNNNNGC 7 cut(s) 44, 53, 306, 641, 822, 1119, 1128
NciI CCSGG 3 cut(s) 58, 264, 281
NlaIII CATG 9 cut(s) 110, 212, 275, 340, 473, 863, 1021, 1099, 1135
NlaIV GGNNCC 3 cut(s) 93, 439, 478
NsbI TGCGCA 1 cut(s) 310
NspI RCATGY 2 cut(s) 340, 473
PagI TCATGA 2 cut(s) 208, 859
PciI ACATGT 2 cut(s) 336, 469
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 2 cut(s) 222, 736
PflFI GACNNNGTC 1 cut(s) 272
PkrI GCNGC 6 cut(s) 40, 66, 502, 631, 634, 661
PleI GAGTC 1 cut(s) 943
PpsI GAGTC 1 cut(s) 943
PscI ACATGT 2 cut(s) 336, 469
PshBI ATTAAT 1 cut(s) 357
Psp6I CCWGG 3 cut(s) 47, 828, 997
PspGI CCWGG 3 cut(s) 47, 828, 997
PspN4I GGNNCC 3 cut(s) 93, 439, 478
PstI CTGCAG 1 cut(s) 502
PsuI RGATCY 1 cut(s) 123
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 8 cut(s) 114, 373, 439, 544, 882, 961, 1016, 1094
RsaNI GTAC 8 cut(s) 113, 372, 438, 543, 881, 960, 1015, 1093
RseI CAYNNNNRTG 2 cut(s) 150, 1130
SaqAI TTAA 2 cut(s) 357, 954
SatI GCNGC 6 cut(s) 39, 65, 501, 630, 633, 660
SchI GAGTC 1 cut(s) 943
ScrFI CCNGG 6 cut(s) 49, 58, 264, 281, 830, 999
SduI GDGCHC 3 cut(s) 646, 818, 1140
SexAI ACCWGGT 1 cut(s) 997
SfaNI GCATC 2 cut(s) 834, 1122
SfcI CTRYAG 1 cut(s) 498
SmiMI CAYNNNNRTG 2 cut(s) 150, 1130
SmlI CTYRAG 1 cut(s) 953
SmoI CTYRAG 1 cut(s) 953
Sse9I AATT 4 cut(s) 420, 537, 728, 1043
SsiI CCGC 7 cut(s) 41, 65, 135, 534, 635, 985, 1129
SspMI CTAG 1 cut(s) 1141
StyD4I CCNGG 6 cut(s) 47, 56, 262, 279, 828, 997
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 3 cut(s) 189, 463, 562
TaiI ACGT 1 cut(s) 914
TasI AATT 4 cut(s) 420, 537, 728, 1043
TatI WGTACW 4 cut(s) 542, 880, 1014, 1092
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 2 cut(s) 222, 736
Tru1I TTAA 2 cut(s) 357, 954
Tru9I TTAA 2 cut(s) 357, 954
TscAI CASTG 8 cut(s) 16, 154, 192, 295, 457, 466, 823, 994
TseI GCWGC 5 cut(s) 38, 500, 629, 632, 659
TspDTI ATGAA 7 cut(s) 123, 225, 579, 741, 848, 1034, 1112
TspGWI ACGGA 1 cut(s) 469
TspRI CASTG 8 cut(s) 16, 154, 192, 295, 457, 466, 823, 994
Tth111I GACNNNGTC 1 cut(s) 272
Vha464I CTTAAG 1 cut(s) 953
VneI GTGCAC 2 cut(s) 642, 814
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 3 cut(s) 537, 728, 1043
XceI RCATGY 2 cut(s) 340, 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 855
XspI CTAG 1 cut(s) 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.