Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000815

Physical Location & Seq

Genomic Coordinates Forward (+)

15506795 .. 15509538

Gene Structure 2744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0094000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCCTTTAAGTGAGATCCATGACCTCTCTGAAAGCTATCTTGTGAATGATATTTGTATTGTTGAAGCCAATGTTTCAGTTCGTAAGGGTGATATTAAAATCTTAGAAAATGAAACTGGCGAGCTTATGGATTTTAAGGGTTTAGGACGAATAGAGTTAGCTTTTCATCCACTGCTAGAGGAAGTATGTTTGTTGCACCCTTCTTTGATTGAGTGCCAACAGAGGAGGAGTCGTACATTTGTCGAATGTGCATTCACAACATTGGGCCGACTCTTACATTTCCTGAAGACTACAAAGGTGAAGGATTTGAACCAAGATGGCTATGAGAGGCTTCAAATTTTATGGGATGAGCTCGAAAGATTCAAGTTTGACTTGACTTGGCTGCAGCCTCATGTTCAATCTGTTTTTGGTATGAAGAACATGACCGGAAGAGTTGATAGAATGAGAGAAGATGTCAATGTTTTGGAGAATGAAATCAGGAGGCGGAGGGCTTTGCTAGCAGCTGCAGAGGTTGACCTTGAGAGAGCGAAAGAAGATTTGGTAAAGGCAGAACAAGGGTTTAAAAAGATAGGTGATGTGGATTGTGTAATAGACTATCCGTTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

202

Amino Acids

23.42

Weight (kDa)

5.25

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77120
fragaria_vesca	FvH4_2g14750 FvH4_2g14750 FvH4_2g14760 FvH4_2g14760
malus_domestica	MD05G1013200.v1.1 MD05G1013400.v1.1 MD05G1179800.v1.1 MD05G1180800.v1.1 MD08G1068100.v1.1 MD09G1211500.v1.1 MD10G1013800.v1.1 MD10G1013900.v1.1 MD10G1014200.v1.1 MD10G1014500.v1.1 MD11G1004800.v1.1
prunus_persica	Prupe.8G018100_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018300_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018400_v2.0.a1 Prupe.8G018600_v2.0.a1 Prupe.8G207100_v2.0.a1 Prupe.8G207400_v2.0.a1
pyrus_communis	pycom05g00790 pycom05g16630 pycom10g00850 pycom10g00860 pycom10g00890
rosa_chinensis	RchiOBHm_Chr1g0331561 RchiOBHm_Chr6g0277181 RchiOBHm_Chr6g0277231 RchiOBHm_Chr6g0277261 RchiOBHm_Chr6g0277281 RchiOBHm_Chr6g0277311 RchiOBHm_Chr6g0277321
rosa_laevigata	RLG00000013310 RLG00000013311 RLG00000013312 RLG00000013313 RLG00000013319 RLG00000013325
rosa_multiflora	Rmu_co8243651.1_g000001 Rmu_sc0000030.1_g000028 Rmu_sc0000030.1_g000031 Rmu_sc0000030.1_g000035
rosa_roxburghii	Rroxscaffold_4G00319070 Rroxscaffold_7G00191450 Rroxscaffold_7G00191460 Rroxscaffold_7G00191470 Rroxscaffold_7G00191540
rosa_rugosa	Rorug01G0094000 Rorug01G0094100 Rorug06G0107000 Rorug06G0107100
rosa_samantha	Rh1BG090100 Rh1CG113500 Rh6BG221900 Rh6DG214200 Rh6DG214400 Rh6DG214700 Rh6DG214900
rosa_wichuraiana	Rw6G019010 Rw6G019020 Rw6G019030 Rw6G019040 Rw6G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	484
AclWI	GGATC	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	305
AfaI	GTAC	1 cut(s)	235
AgsI	TTSAA	5 cut(s)	65, 310, 335, 364, 398
AjuI	GAANNNNNNNTTGG	2 cut(s)	521, 553
AluBI	AGCT	5 cut(s)	36, 124, 161, 352, 503
AluI	AGCT	5 cut(s)	36, 124, 161, 352, 503
Alw21I	GWGCWC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	10
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	4 cut(s)	382, 385, 500, 503
ApoI	RAATTY	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	3 cut(s)	101, 310, 584
AsuNHI	GCTAGC	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	4 cut(s)	369, 397, 490, 512
BccI	CCATC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	176, 497
BfmI	CTRYAG	2 cut(s)	383, 504
BisI	GCNGC	4 cut(s)	383, 386, 501, 504
BlsI	GCNGC	4 cut(s)	384, 387, 502, 505
BmgT120I	GGNCC	1 cut(s)	265
BmtI	GCTAGC	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	293
BpuEI	CTTGAG	1 cut(s)	539
BsaWI	WCCGGW	1 cut(s)	425
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bse1I	ACTGG	1 cut(s)	121
BseGI	GGATG	2 cut(s)	166, 352
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	2 cut(s)	238, 241
BseXI	GCAGC	4 cut(s)	369, 397, 490, 512
BshFI	GGCC	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	426
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	15
BspACI	CCGC	1 cut(s)	484
BspANI	GGCC	1 cut(s)	267
BspMAI	CTGCAG	2 cut(s)	387, 508
BspOI	GCTAGC	1 cut(s)	500
BspPI	GGATC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	424
BstC8I	GCNNGC	2 cut(s)	122, 498
BstDEI	CTNAG	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	166, 352
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstSFI	CTRYAG	2 cut(s)	383, 504
BstV1I	GCAGC	4 cut(s)	369, 397, 490, 512
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	166, 352
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	170
Cac8I	GCNNGC	2 cut(s)	122, 498
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	3 cut(s)	20, 392, 421
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	1 cut(s)	103
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
DraI	TTTAAA	1 cut(s)	562
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
EciI	GGCGGA	1 cut(s)	499
Ecl136II	GAGCTC	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	354
FaeI	CATG	3 cut(s)	23, 395, 424
FaiI	YATR	8 cut(s)	21, 128, 187, 324, 343, 393, 413, 422
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	3 cut(s)	19, 391, 420
Fnu4HI	GCNGC	4 cut(s)	383, 386, 501, 504
FokI	GGATG	2 cut(s)	153, 359
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	4 cut(s)	383, 386, 501, 504
FspBI	CTAG	2 cut(s)	176, 497
GluI	GCNGC	4 cut(s)	383, 386, 501, 504
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	426
Hin1II	CATG	3 cut(s)	23, 395, 424
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	3 cut(s)	229, 270, 360
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	3 cut(s)	101, 310, 584
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	2 cut(s)	283, 478
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	2 cut(s)	210, 295
HpyCH4V	TGCA	4 cut(s)	196, 251, 385, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	1 cut(s)	103
Hsp92II	CATG	3 cut(s)	23, 395, 424
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	4 cut(s)	102, 296, 439, 463
Lsp1109I	GCAGC	4 cut(s)	369, 397, 490, 512
MaeI	CTAG	2 cut(s)	176, 497
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	5 cut(s)	298, 427, 441, 461, 545
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	1 cut(s)	336
MlyI	GAGTC	2 cut(s)	238, 264
MnlI	CCTC	9 cut(s)	35, 172, 216, 219, 321, 399, 474, 480, 502
MseI	TTAA	4 cut(s)	8, 96, 135, 561
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	497
NdeII	GATC	1 cut(s)	15
NheI	GCTAGC	1 cut(s)	496
NlaIII	CATG	3 cut(s)	23, 395, 424
PctI	GAATGC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	360
PkrI	GCNGC	4 cut(s)	384, 387, 502, 505
PleI	GAGTC	2 cut(s)	237, 264
PpsI	GAGTC	2 cut(s)	237, 264
Psp124BI	GAGCTC	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	265
PstI	CTGCAG	2 cut(s)	387, 508
PsuI	RGATCY	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	4 cut(s)	8, 96, 135, 561
SatI	GCNGC	4 cut(s)	383, 386, 501, 504
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	2 cut(s)	238, 264
SduI	GDGCHC	1 cut(s)	354
SfcI	CTRYAG	2 cut(s)	383, 504
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	1 cut(s)	484
SspMI	CTAG	2 cut(s)	176, 497
SstI	GAGCTC	1 cut(s)	354
TaqI	TCGA	2 cut(s)	243, 354
TasI	AATT	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	4 cut(s)	8, 96, 135, 561
Tru9I	TTAA	4 cut(s)	8, 96, 135, 561
TscAI	CASTG	1 cut(s)	177
TseI	GCWGC	4 cut(s)	382, 385, 500, 503
TspDTI	ATGAA	4 cut(s)	126, 155, 428, 486
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	1 cut(s)	177
XapI	RAATTY	1 cut(s)	336
XspI	CTAG	2 cut(s)	176, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.