Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Reverse (-)

11179585 .. 11181984

Gene Structure 2400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G011050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTACAAAGGACTGTCCTCAGGGTTGATATATCATGCCTAAAATGCAAGAAGAAGATTCTCAAGGCAGTTACTGGCCTAGAAGGTGTGGATAAAATTGAAGTTGATGCAGCCAAGGGAACTTTGACAGTGACAGGAAATGCAGACCCTTATGACATAATAGTCCGGTGCAGAAAAGCCGGCAAGTTTGCCGAGGTAGTGACCATCGGGCCTCCTCCGGCTCCACCTAAACCGAAAGAAGATGAGAAAAAGAAGCCAGAGGAGAAGAAACCAGCAGACGAGAAGTTTCCACAAGGTCCCAATTATATGTATCATCCCCATGTTATAATGTTGGAGCCCCCTTGTCATGAGCCCAACCCATCCTGTTCTATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

125

Amino Acids

13.82

Weight (kDa)

8.78

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	7 - 60	2.6e-12	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
AasI	GACNNNNNNGTC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	6
AgsI	TTSAA	1 cut(s)	101
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	76, 209
ApeKI	GCWGC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	209, 296
AvaII	GGWCC	1 cut(s)	296
AxyI	CCTNAGG	1 cut(s)	20
BanII	GRGCYC	2 cut(s)	339, 354
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	2 cut(s)	212, 367
BfaI	CTAG	1 cut(s)	80
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	2 cut(s)	209, 296
BmiI	GGNNCC	3 cut(s)	222, 298, 336
BmsI	GCATC	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	114, 192
BsaWI	WCCGGW	1 cut(s)	165
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	79
Bse21I	CCTNAGG	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	114, 192
BseGI	GGATG	2 cut(s)	313, 359
BseMII	CTCAG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	2 cut(s)	204, 275
BseXI	GCAGC	1 cut(s)	122
BsgI	GTGCAG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	78, 211
BsiSI	CCGG	3 cut(s)	166, 180, 218
BslFI	GGGAC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	2 cut(s)	78, 211
Bsp1286I	GDGCHC	2 cut(s)	339, 354
BspANI	GGCC	2 cut(s)	78, 211
BspCNI	CTCAG	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	3 cut(s)	222, 298, 336
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	114, 192
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	16, 130
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	313, 359
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	122
Bsu36I	CCTNAGG	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	78, 211
BtsCI	GGATG	2 cut(s)	313, 359
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	74
CciI	TCATGA	1 cut(s)	346
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	209, 296
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	4 cut(s)	36, 320, 347, 373
CviJI	RGCY	8 cut(s)	78, 113, 179, 211, 221, 256, 337, 352
CviKI_1	RGCY	8 cut(s)	78, 113, 179, 211, 221, 256, 337, 352
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	1 cut(s)	20
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	2 cut(s)	339, 354
Eco47I	GGWCC	1 cut(s)	296
Eco81I	CCTNAGG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	2 cut(s)	339, 354
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	4 cut(s)	39, 323, 350, 376
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	4 cut(s)	35, 319, 346, 372
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	2 cut(s)	300, 346
FriOI	GRGCYC	2 cut(s)	339, 354
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	78, 211
HapII	CCGG	3 cut(s)	166, 180, 218
Hin1II	CATG	4 cut(s)	39, 323, 350, 376
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	3 cut(s)	166, 180, 218
Hpy188III	TCNNGA	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	16, 130
HpyCH4V	TGCA	4 cut(s)	48, 110, 143, 171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	39, 323, 350, 376
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
LmnI	GCTCC	2 cut(s)	226, 334
LpnPI	CCDG	8 cut(s)	7, 60, 120, 179, 193, 231, 270, 285
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	3 cut(s)	70, 130, 199
MboII	GAAGA	4 cut(s)	64, 67, 251, 277
MhlI	GDGCHC	2 cut(s)	339, 354
MluCI	AATT	2 cut(s)	96, 301
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	5 cut(s)	29, 187, 222, 225, 253
MroNI	GCCGGC	1 cut(s)	179
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	3 cut(s)	166, 180, 218
MwoI	GCNNNNNNNGC	1 cut(s)	45
NaeI	GCCGGC	1 cut(s)	181
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	4 cut(s)	39, 323, 350, 376
NlaIV	GGNNCC	3 cut(s)	222, 298, 336
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	130, 199
PagI	TCATGA	1 cut(s)	346
PdiI	GCCGGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	112
PpuMI	RGGWCCY	1 cut(s)	296
PsiI	TTATAA	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	296
PspN4I	GGNNCC	3 cut(s)	222, 298, 336
PspPI	GGNCC	2 cut(s)	209, 296
PspPPI	RGGWCCY	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
RseI	CAYNNNNRTG	1 cut(s)	318
SatI	GCNGC	1 cut(s)	111
Sau96I	GGNCC	2 cut(s)	209, 296
SduI	GDGCHC	2 cut(s)	339, 354
SetI	ASST	4 cut(s)	88, 198, 229, 298
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	96, 301
SspMI	CTAG	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	16, 130
TasI	AATT	2 cut(s)	96, 301
TfiI	GAWTC	1 cut(s)	58
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	2 cut(s)	130, 199
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	2 cut(s)	130, 199
TspRI	CASTG	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	296
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.