Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Reverse (-)

41822413 .. 41823022

Gene Structure 610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG221600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAAGGAAATTGTGATAAAAGTCAATATTAATTGCCAGATTTGCAAGACAGATGTACTAAAAGCCGTTGCCAAGCTTACAGGAATAACTATGGTGGTAGTAGATGGTGAGAAGGGATTACTGAGAGTTGTGGGAGATGTTGATCCAGTGTTGGTGGTGAAACGACTAAGGAAGGCCAGAAAAGTAGCAGAAATTATAAGTGTTGGACCGCCGAAGCCTTCGGAACCTAAGCAAATTCCTTCTGTATTCCTTCTTCCTCCATGTTGTAATCAGTGTGAGCTTGTTGGGGTCATCAGCTATGCTCCTCATTTTGATGGTGGAGTGTGCAACATCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

112

Amino Acids

12.07

Weight (kDa)

8.99

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	6 - 58	3.9e-09	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	197
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	1 cut(s)	137
AcsI	RAATTY	1 cut(s)	234
AfaI	GTAC	1 cut(s)	57
AluBI	AGCT	3 cut(s)	76, 280, 297
AluI	AGCT	3 cut(s)	76, 280, 297
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	174
ApoI	RAATTY	1 cut(s)	234
AseI	ATTAAT	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	119, 169
AvaII	GGWCC	1 cut(s)	206
BarI	GAAGNNNNNNTAC	2 cut(s)	237, 269
BccI	CCATC	2 cut(s)	98, 308
BceAI	ACGGC	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	141
BseGI	GGATG	1 cut(s)	330
BseJI	GATNNNNATC	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	146
BssMI	GATC	1 cut(s)	142
BstDEI	CTNAG	3 cut(s)	122, 167, 228
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	153, 278
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	6 cut(s)	65, 76, 176, 217, 280, 297
CviKI_1	RGCY	6 cut(s)	65, 76, 176, 217, 280, 297
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	3 cut(s)	122, 167, 228
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	206
FaeI	CATG	1 cut(s)	264
FaiI	YATR	4 cut(s)	92, 197, 262, 300
FatI	CATG	1 cut(s)	260
FokI	GGATG	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	264
HindIII	AAGCTT	1 cut(s)	74
HphI	GGTGA	2 cut(s)	119, 169
Hpy188I	TCNGA	1 cut(s)	223
HpyAV	CCTTC	5 cut(s)	106, 166, 228, 249, 260
HpyCH4V	TGCA	2 cut(s)	45, 327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	3 cut(s)	122, 167, 228
Hsp92II	CATG	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	4 cut(s)	50, 66, 159, 190
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	1 cut(s)	245
MluCI	AATT	4 cut(s)	9, 31, 192, 234
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	2 cut(s)	267, 315
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	1 cut(s)	264
NlaIV	GGNNCC	1 cut(s)	225
PshBI	ATTAAT	1 cut(s)	30
PsiI	TTATAA	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	206
SetI	ASST	4 cut(s)	78, 229, 282, 299
SgeI	CNNG	8 cut(s)	49, 58, 85, 93, 158, 189, 273, 293
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	312
Sse9I	AATT	4 cut(s)	9, 31, 192, 234
SsiI	CCGC	1 cut(s)	209
SspI	AATATT	1 cut(s)	28
TasI	AATT	4 cut(s)	9, 31, 192, 234
TatI	WGTACW	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	2 cut(s)	153, 278
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	153, 278
VpaK11BI	GGWCC	1 cut(s)	206
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.