Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Forward (+)

1719311 .. 1720857

Gene Structure 1547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G018500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAAGAAAACCGTGATAAAAGTCACTATCAATTGTCAGCTTTGCAAAACAGATGTACTAAAAGCAGTCACCAAACTTCCAGGTATAGATATAGTGGCTGTGGATGGACAGAAGGGAACGTTAACTGTTGTGGGGGATGTTGACCCAGTGTTGGTGGTCAAACGACTGAGGAAGATCGGAAAGACTGCACAAATTATCAGCGTCGGACCGCCTAAGCCTCCTGAACCTAAGCCTTCCATACTCCTCCTCCCTCCATGTTGTAATCAATGTGAGCTTGTTGGTTTCAGATATGCTCCTTATGATGGTGGATTGTGCAACATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

109

Amino Acids

11.56

Weight (kDa)

9.26

Isoelectric Point (pI)

25.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	209
AclI	AACGTT	1 cut(s)	119
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	151, 302
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	2 cut(s)	40, 274
AluI	AGCT	2 cut(s)	40, 274
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	206
BccI	CCATC	2 cut(s)	98, 296
BciT130I	CCWGG	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	81
BmrI	ACTGGG	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	140
Bpu10I	CCTNAGC	2 cut(s)	213, 228
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 302
Bse1I	ACTGG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	109, 142
BseLI	CCNNNNNNNGG	2 cut(s)	151, 302
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	2 cut(s)	233, 236
BsgI	GTGCAG	1 cut(s)	171
BslI	CCNNNNNNNGG	2 cut(s)	151, 302
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	146
BssMI	GATC	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	2 cut(s)	13, 127
BstDEI	CTNAG	3 cut(s)	167, 213, 228
BstF5I	GGATG	2 cut(s)	109, 142
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	109, 142
BtsIMutI	CAGTG	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	206
CpoI	CGGWCCG	1 cut(s)	206
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	56
CspI	CGGWCCG	1 cut(s)	206
CviAII	CATG	1 cut(s)	255
CviJI	RGCY	5 cut(s)	40, 98, 217, 232, 274
CviKI_1	RGCY	5 cut(s)	40, 98, 217, 232, 274
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	3 cut(s)	167, 213, 228
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	79
FaeI	CATG	1 cut(s)	258
FaiI	YATR	6 cut(s)	86, 92, 239, 256, 291, 300
FatI	CATG	1 cut(s)	254
FokI	GGATG	2 cut(s)	116, 149
HgaI	GACGC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	258
HincII	GTYRAC	2 cut(s)	123, 142
HindII	GTYRAC	2 cut(s)	123, 142
HpaI	GTTAAC	1 cut(s)	123
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	123, 142
Hpy188I	TCNGA	3 cut(s)	179, 206, 287
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	2 cut(s)	123, 142
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	2 cut(s)	106, 243
HpyCH4III	ACNGT	2 cut(s)	13, 127
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	3 cut(s)	45, 188, 315
HpyF3I	CTNAG	3 cut(s)	167, 213, 228
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	258
KspAI	GTTAAC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	4 cut(s)	66, 93, 159, 234
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	2 cut(s)	22, 67
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	2 cut(s)	16, 184
MfeI	CAATTG	1 cut(s)	31
MluCI	AATT	2 cut(s)	31, 192
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	5 cut(s)	162, 228, 254, 257, 261
MseI	TTAA	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	81
MunI	CAATTG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	258
NmuCI	GTSAC	2 cut(s)	22, 67
Psp1406I	AACGTT	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
Rsr2I	CGGWCCG	1 cut(s)	206
RsrII	CGGWCCG	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	122
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	5 cut(s)	42, 85, 122, 229, 276
SgeI	CNNG	7 cut(s)	25, 92, 93, 158, 233, 267, 287
SinI	GGWCC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	31, 192
SsiI	CCGC	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	13, 127
TaiI	ACGT	1 cut(s)	122
TasI	AATT	2 cut(s)	31, 192
TatI	WGTACW	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	2 cut(s)	22, 67
Tsp45I	GTSAC	2 cut(s)	22, 67
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.