Rh6CG432700

Heavy-metal-associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001393
Physical Location & Seq
Forward (+)
61299898 .. 61300474
577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG432700.1

Sequence Viewer

Length: 357 bp
ATGTCTAAGAAAACTGTAGTGTCAGTAGAGCTGCTGTGTTCAAAGTGCAGGAAAAAGGTGATGAAGTTAGTCGCAACAGTAGAAGGGATAACTTCCATTGTCCTGGACCCGTCAAAAAATACAGTGACAGTAATCGGGGAAGCCGATCCGGTAAAGGTCATTCACAAGGTGAGGAAGTTCAGAAAATCTGCTTCGGTTGTGAGCATCGGTCCTCCAAAGCCGGAAGAGAAGAAGGATGAGAAGAAAGACAAAGACGGCCATGGCCTTGTTCCTTACATACCAAGGACATGTCAAAGATGTGATGTCTGGTATGTGGTTGCTGAAGATGGTTATAACAATTACTGTTCCGTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

118

Amino Acids

13.15

Weight (kDa)

9.32

Isoelectric Point (pI)

18.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 7 - 59 2.4e-11 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AclWI GGATC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 342
AdeI CACNNNGTG 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 287
AgsI TTSAA 1 cut(s) 42
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
AlwI GGATC 1 cut(s) 140
AoxI GGCC 2 cut(s) 256, 262
ApeKI GCWGC 1 cut(s) 31
AspS9I GGNCC 2 cut(s) 106, 209
AsuHPI GGTGA 2 cut(s) 70, 181
AvaII GGWCC 2 cut(s) 106, 209
BbvI GCAGC 1 cut(s) 18
BccI CCATC 1 cut(s) 320
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 2 cut(s) 106, 209
BmgT120I GGNCC 2 cut(s) 106, 209
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 259, 281
BsaWI WCCGGW 1 cut(s) 148
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 2 cut(s) 259, 281
BseGI GGATG 1 cut(s) 241
BseXI GCAGC 1 cut(s) 18
BsgI GTGCAG 1 cut(s) 67
BshFI GGCC 2 cut(s) 258, 264
BsiSI CCGG 2 cut(s) 149, 221
BsnI GGCC 2 cut(s) 258, 264
Bsp143I GATC 1 cut(s) 145
Bsp19I CCATGG 1 cut(s) 259
BspANI GGCC 2 cut(s) 258, 264
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 259, 281
BssMI GATC 1 cut(s) 145
BssT1I CCWWGG 2 cut(s) 259, 281
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 5 cut(s) 16, 79, 124, 130, 344
Bst6I CTCTTC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstNI CCWGG 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 18
BstXI CCANNNNNNTGG 1 cut(s) 103
BsuRI GGCC 2 cut(s) 258, 264
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 129
Cfr13I GGNCC 2 cut(s) 106, 209
CviAII CATG 2 cut(s) 260, 288
CviJI RGCY 5 cut(s) 31, 143, 220, 258, 264
CviKI_1 RGCY 5 cut(s) 31, 143, 220, 258, 264
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
DraIII CACNNNGTG 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 2 cut(s) 259, 281
Eco47I GGWCC 2 cut(s) 106, 209
Eco57I CTGAAG 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 2 cut(s) 259, 281
ErhI CCWWGG 2 cut(s) 259, 281
FaeI CATG 2 cut(s) 263, 291
FaiI YATR 6 cut(s) 261, 278, 289, 312, 333, 353
FatI CATG 2 cut(s) 259, 287
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 32
HaeIII GGCC 2 cut(s) 258, 264
HapII CCGG 2 cut(s) 149, 221
Hin1II CATG 2 cut(s) 263, 291
HpaII CCGG 2 cut(s) 149, 221
HphI GGTGA 2 cut(s) 70, 181
Hpy188I TCNGA 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 77, 226
HpyCH4III ACNGT 5 cut(s) 16, 79, 124, 130, 344
HpyCH4V TGCA 1 cut(s) 48
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 2 cut(s) 263, 291
Kzo9I GATC 1 cut(s) 145
LpnPI CCDG 6 cut(s) 34, 89, 116, 162, 234, 292
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 124
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 4 cut(s) 236, 241, 253, 335
MluCI AATT 1 cut(s) 337
MnlI CCTC 2 cut(s) 165, 222
MspI CCGG 2 cut(s) 149, 221
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
NcoI CCATGG 1 cut(s) 259
NdeII GATC 1 cut(s) 145
NlaIII CATG 2 cut(s) 263, 291
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 291
PciI ACATGT 1 cut(s) 287
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfoI TCCNGGA 1 cut(s) 102
PkrI GCNGC 1 cut(s) 33
PscI ACATGT 1 cut(s) 287
PsiI TTATAA 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 2 cut(s) 106, 209
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 2 cut(s) 106, 209
ScrFI CCNGG 1 cut(s) 104
SetI ASST 4 cut(s) 33, 60, 159, 171
SfaNI GCATC 1 cut(s) 213
SfcI CTRYAG 1 cut(s) 15
SinI GGWCC 2 cut(s) 106, 209
Sse9I AATT 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 2 cut(s) 259, 281
TaaI ACNGT 5 cut(s) 16, 79, 124, 130, 344
TaqII GACCGA 1 cut(s) 197
TasI AATT 1 cut(s) 337
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 2 cut(s) 106, 209
XceI RCATGY 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.