Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Reverse (-)

39187944 .. 39197917

Gene Structure 9974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG218200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGATAAGATTCCTGCAGCAGGGTTGCTCCCAAAGTCTAATGAAAAGACGGTCAATAAATCTCTGGTTTCGCCTAGCATCGTACCTCGAAACAGTCCCAATGCAAAAGATTCAGCTAACTCTGGAAGAGAATCTGTTCCATTTCCGAAAAGGCGTGCTATGTTGCTCAGACCAGCTCATGTGCGAAGCCCATCAAATAGCAAAGTTGAGGTGGAGAAGCCACCGTTGGCCGTTGAATCTGAAACTTTCAGCAGTATGACGAGTAAATTGGATGGTGCAGTGGGTCTCAGTTCTCAAATCAAAACTGAAATCGTGATAAAAGTCAATATTAATTGCCAGATTTGCAAGACAGATGTACTAAAAGCCGTTGCCAAGCTTACAGGAATAACTATGGTGGTAGTAGATGGTGAGAAGGGATTACTGAGAGTTGTGGGAGATGTTGATCCAGTGTTGGTGGTGAAACGACTAAGGAAGGCCAGAAAAGTAGCAGAAATTATAAGTGTTGGACCGCCGAAGCCTTCAGAACCTAAGCAAATTCCTTCTGTATTCCTTCTTCCTCCATGTTGTAATCAGTGTGAGCTTGTTGGGGTCATCAGCTATGTTCCTCATTTTGATGGTGGAGTGTGCAACATCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

212

Amino Acids

22.71

Weight (kDa)

9.53

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	106 - 158	1.5e-08	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
AciI	CCGC	1 cut(s)	509
AclWI	GGATC	1 cut(s)	437
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	2 cut(s)	84, 357
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	5 cut(s)	116, 176, 376, 580, 597
AluI	AGCT	5 cut(s)	116, 176, 376, 580, 597
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	437
AoxI	GGCC	2 cut(s)	228, 474
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	534
AseI	ATTAAT	1 cut(s)	330
Asp700I	GAANNNNTTC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	419, 469
AvaII	GGWCC	1 cut(s)	506
BarI	GAAGNNNNNNTAC	2 cut(s)	537, 569
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	4 cut(s)	199, 266, 398, 608
BceAI	ACGGC	2 cut(s)	215, 350
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	506
BmsI	GCATC	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	528
BsaBI	GATNNNNATC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	446
Bse8I	GATNNNNATC	1 cut(s)	441
BseGI	GGATG	2 cut(s)	277, 630
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	3 cut(s)	181, 301, 413
BseNI	ACTGG	1 cut(s)	446
BseXI	GCAGC	1 cut(s)	29
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	2 cut(s)	230, 476
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	2 cut(s)	230, 476
Bso31I	GGTCTC	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	442
BspACI	CCGC	1 cut(s)	509
BspANI	GGCC	2 cut(s)	230, 476
BspCNI	CTCAG	3 cut(s)	180, 300, 414
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	446
BssMI	GATC	1 cut(s)	442
Bst4CI	ACNGT	3 cut(s)	52, 95, 225
Bst6I	CTCTTC	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	5 cut(s)	167, 287, 422, 467, 528
BstENI	CCTNNNNNAGG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	277, 630
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	230, 476
BtsCI	GGATG	2 cut(s)	277, 630
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	3 cut(s)	285, 453, 578
Cac8I	GCNNGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	506
Csp6I	GTAC	2 cut(s)	83, 356
CviAII	CATG	2 cut(s)	179, 561
CviQI	GTAC	2 cut(s)	83, 356
DdeI	CTNAG	5 cut(s)	167, 287, 422, 467, 528
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	506
Eco57I	CTGAAG	1 cut(s)	504
EcoNI	CCTNNNNNAGG	1 cut(s)	18
FaeI	CATG	2 cut(s)	182, 564
FaiI	YATR	7 cut(s)	161, 180, 257, 392, 497, 562, 600
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	2 cut(s)	178, 560
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	2 cut(s)	284, 617
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	230, 476
Hin1II	CATG	2 cut(s)	182, 564
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	4 cut(s)	10, 110, 131, 236
HphI	GGTGA	2 cut(s)	419, 469
Hpy188I	TCNGA	4 cut(s)	147, 170, 241, 523
Hpy188III	TCNNGA	2 cut(s)	123, 313
HpyAV	CCTTC	5 cut(s)	406, 466, 528, 549, 560
HpyCH4III	ACNGT	3 cut(s)	52, 95, 225
HpyCH4V	TGCA	5 cut(s)	17, 104, 278, 345, 627
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	5 cut(s)	167, 287, 422, 467, 528
Hsp92II	CATG	2 cut(s)	182, 564
Kzo9I	GATC	1 cut(s)	442
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	9 cut(s)	6, 27, 50, 108, 186, 350, 366, 459, 490
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	75
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	2 cut(s)	138, 545
MluCI	AATT	4 cut(s)	266, 331, 492, 534
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	4 cut(s)	96, 202, 567, 615
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	612
MwoI	GCNNNNNNNGC	1 cut(s)	342
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	2 cut(s)	182, 564
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	4 cut(s)	10, 110, 131, 236
PkrI	GCNGC	1 cut(s)	19
PshBI	ATTAAT	1 cut(s)	330
PsiI	TTATAA	1 cut(s)	497
PspPI	GGNCC	1 cut(s)	506
PstI	CTGCAG	1 cut(s)	19
RsaI	GTAC	2 cut(s)	84, 357
RsaNI	GTAC	2 cut(s)	83, 356
RseI	CAYNNNNRTG	1 cut(s)	612
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	1 cut(s)	506
SetI	ASST	8 cut(s)	88, 118, 178, 213, 378, 529, 582, 599
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	506
SmiMI	CAYNNNNRTG	1 cut(s)	612
Sse9I	AATT	4 cut(s)	266, 331, 492, 534
SsiI	CCGC	1 cut(s)	509
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	1 cut(s)	75
TaaI	ACNGT	3 cut(s)	52, 95, 225
TaqI	TCGA	1 cut(s)	88
TasI	AATT	4 cut(s)	266, 331, 492, 534
TatI	WGTACW	1 cut(s)	355
TfiI	GAWTC	4 cut(s)	10, 110, 131, 236
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	3 cut(s)	285, 453, 578
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	57
TspRI	CASTG	3 cut(s)	285, 453, 578
VpaK11BI	GGWCC	1 cut(s)	506
VspI	ATTAAT	1 cut(s)	330
XagI	CCTNNNNNAGG	1 cut(s)	18
XapI	RAATTY	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.