Rh1CG139800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001393
Physical Location & Seq
Forward (+)
30474822 .. 30476979
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG139800.1

Sequence Viewer

Length: 288 bp
ATGTGTCATGCTATTATTGGTTCAGCTGACCTAAGAGTTGAGCTCGACCTGAGACGACGACGGTCTGCCTTCGCCGCCGTCCGTCGAGATGGACGATTAACTGGTCTGACTAGACAATTGATTTTCATCCCCTGTTCCCCTTCTTTTGACGCCGCAACGCTTTGGTTTGAGATTGCTTGCTCGCCGTCGGACTCGGATCTCCAGAGCGGCGGGGAGTCTTCTTCTCAGTGCAGGCTCCGGTTCTTTCTGGTCGAGGAGGCGCCGAGGCCGAGGAACAGGCAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.66

Weight (kDa)

9.0

Isoelectric Point (pI)

98.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 207
AciI CCGC 4 cut(s) 75, 153, 207, 210
AclWI GGATC 1 cut(s) 204
AcyI GRCGYC 2 cut(s) 150, 260
AluBI AGCT 3 cut(s) 26, 43, 284
AluI AGCT 3 cut(s) 26, 43, 284
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 204
AoxI GGCC 1 cut(s) 266
AspLEI GCGC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 259
BanII GRGCYC 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 45
BccI CCATC 1 cut(s) 83
BceAI ACGGC 2 cut(s) 62, 169
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 263
BisI GCNGC 3 cut(s) 75, 153, 208
BlsI GCNGC 3 cut(s) 76, 154, 209
BmiI GGNNCC 2 cut(s) 236, 261
BoxI GACNNNNGTC 1 cut(s) 61
BpiI GAAGAC 1 cut(s) 210
BplI GAGNNNNNCTC 2 cut(s) 27, 59
BpmI CTGGAG 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 125
BsaHI GRCGYC 2 cut(s) 150, 260
BsaJI CCNNGG 2 cut(s) 263, 269
BsaWI WCCGGW 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 125
BseDI CCNNGG 2 cut(s) 263, 269
BseGI GGATG 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 125
BseMII CTCAG 2 cut(s) 41, 239
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 250
BshFI GGCC 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsnI GGCC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 4 cut(s) 75, 153, 207, 210
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 2 cut(s) 42, 238
BspLI GGNNCC 2 cut(s) 236, 261
BspPI GGATC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 259
BsrBI CCGCTC 1 cut(s) 207
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 263, 269
BssMI GATC 1 cut(s) 196
BssNI GRCGYC 2 cut(s) 150, 260
Bst4CI ACNGT 1 cut(s) 63
BstACI GRCGYC 2 cut(s) 150, 260
BstC8I GCNNGC 4 cut(s) 178, 182, 233, 282
BstDEI CTNAG 3 cut(s) 32, 50, 225
BstF5I GGATG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstPAI GACNNNNGTC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 268
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 233
Cac8I GCNNGC 4 cut(s) 178, 182, 233, 282
CfoI GCGC 1 cut(s) 262
CseI GACGC 1 cut(s) 158
CviAII CATG 1 cut(s) 8
CviJI RGCY 5 cut(s) 26, 43, 235, 268, 284
CviKI_1 RGCY 5 cut(s) 26, 43, 235, 268, 284
DdeI CTNAG 3 cut(s) 32, 50, 225
DinI GGCGCC 1 cut(s) 261
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 45
EgeI GGCGCC 1 cut(s) 261
EheI GGCGCC 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 1 cut(s) 11
FaiI YATR 1 cut(s) 9
FatI CATG 1 cut(s) 7
FauI CCCGC 1 cut(s) 203
Fnu4HI GCNGC 3 cut(s) 75, 153, 208
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 3 cut(s) 75, 153, 208
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 261
GluI GCNGC 3 cut(s) 75, 153, 208
GsuI CTGGAG 1 cut(s) 185
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 1 cut(s) 268
HapII CCGG 1 cut(s) 238
HgaI GACGC 1 cut(s) 158
HhaI GCGC 1 cut(s) 262
Hin1I GRCGYC 2 cut(s) 150, 260
Hin1II CATG 1 cut(s) 11
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 2 cut(s) 191, 215
HpaII CCGG 1 cut(s) 238
Hpy188I TCNGA 3 cut(s) 108, 190, 196
Hpy188III TCNNGA 2 cut(s) 86, 202
Hpy99I CGWCG 4 cut(s) 60, 63, 87, 190
HpyAV CCTTC 2 cut(s) 79, 150
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 3 cut(s) 32, 50, 225
Hsp92I GRCGYC 2 cut(s) 150, 260
Hsp92II CATG 1 cut(s) 11
HspAI GCGC 1 cut(s) 260
KasI GGCGCC 1 cut(s) 259
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 8 cut(s) 62, 87, 145, 215, 217, 233, 251, 262
MaeI CTAG 1 cut(s) 111
MalI GATC 1 cut(s) 198
MbiI CCGCTC 1 cut(s) 207
MboI GATC 1 cut(s) 196
MboII GAAGA 2 cut(s) 210, 213
MfeI CAATTG 1 cut(s) 116
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 1 cut(s) 116
Mly113I GGCGCC 1 cut(s) 260
MlyI GAGTC 2 cut(s) 185, 224
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 4 cut(s) 247, 250, 258, 264
MseI TTAA 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 238
MunI CAATTG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 74
NarI GGCGCC 1 cut(s) 260
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 2 cut(s) 236, 261
NmeAIII GCCGAG 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 91
PkrI GCNGC 3 cut(s) 76, 154, 209
PleI GAGTC 2 cut(s) 185, 223
PluTI GGCGCC 1 cut(s) 263
PpsI GAGTC 2 cut(s) 185, 223
PshAI GACNNNNGTC 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 236, 261
PsuI RGATCY 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 26
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 3 cut(s) 75, 153, 208
Sau3AI GATC 1 cut(s) 196
SchI GAGTC 2 cut(s) 185, 224
SduI GDGCHC 1 cut(s) 45
SetI ASST 5 cut(s) 28, 33, 45, 51, 286
SfoI GGCGCC 1 cut(s) 261
Sse9I AATT 1 cut(s) 116
SsiI CCGC 4 cut(s) 75, 153, 207, 210
SspDI GGCGCC 1 cut(s) 259
SspMI CTAG 1 cut(s) 111
SstI GAGCTC 1 cut(s) 45
TaaI ACNGT 1 cut(s) 63
TaqI TCGA 3 cut(s) 45, 85, 252
TasI AATT 1 cut(s) 116
TauI GCSGC 3 cut(s) 77, 155, 210
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 115
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 233
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.