Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Reverse (-)

12895876 .. 12896536

Gene Structure 661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAAGAAAATTGTGATAAAAGTCGGCATAAATTGCCAGATTTGCAAGACAGATGTGTTGAAAACAGTTACCAAGCTTCAAGGGATAAATAGTGTGGCCGTAGATGCTGAGAAGGGAACATTGACGGTGGTGGGAGATGTTGATCCAGTGTTGGTGGTGAGGCGACTGAGGAAGGTTGGGAGAGCAGCAGAAATTGTGAGTGTTGGACCGCCAAAGCCTCCTGAATATAAACTTGTAATCCTTGATCTCCCTTCATGCTGTAACCAATGTGAGCTCGTTGGATACAAATATGTTCCTTTTGATCAGGGTGGAGGGTGCCATATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

110

Amino Acids

11.76

Weight (kDa)

8.96

Isoelectric Point (pI)

31.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	6 - 58	1.3e-11	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	315
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	61, 80
AluBI	AGCT	2 cut(s)	76, 274
AluI	AGCT	2 cut(s)	76, 274
Alw21I	GWGCWC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	83
BciVI	GTATCC	1 cut(s)	275
BclI	TGATCA	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	275
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	317
BmsI	GCATC	1 cut(s)	94
BsaBI	GATNNNNATC	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	141
BseJI	GATNNNNATC	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	99, 158
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	197
BshFI	GGCC	1 cut(s)	98
BshNI	GGYRCC	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	3 cut(s)	142, 244, 301
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	2 cut(s)	100, 159
BspLI	GGNNCC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	146
BssMI	GATC	3 cut(s)	142, 244, 301
Bst4CI	ACNGT	2 cut(s)	67, 127
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstDEI	CTNAG	2 cut(s)	108, 167
BstKTI	GATC	3 cut(s)	145, 247, 304
BstMBI	GATC	3 cut(s)	142, 244, 301
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 42, 104
BstV1I	GCAGC	1 cut(s)	197
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	206
CviAII	CATG	1 cut(s)	255
CviJI	RGCY	4 cut(s)	76, 98, 217, 274
CviKI_1	RGCY	4 cut(s)	76, 98, 217, 274
DdeI	CTNAG	2 cut(s)	108, 167
DpnI	GATC	3 cut(s)	144, 246, 303
DpnII	GATC	3 cut(s)	142, 244, 301
EaeI	YGGCCR	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	276
FaeI	CATG	1 cut(s)	258
FaiI	YATR	5 cut(s)	29, 228, 256, 291, 321
FatI	CATG	1 cut(s)	254
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	186
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	258
HindIII	AAGCTT	1 cut(s)	74
HphI	GGTGA	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	221
HpyAV	CCTTC	3 cut(s)	106, 166, 261
HpyCH4III	ACNGT	2 cut(s)	67, 127
HpyCH4V	TGCA	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 42, 104
HpyF3I	CTNAG	2 cut(s)	108, 167
Hsp92II	CATG	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	142, 244, 301
LpnPI	CCDG	4 cut(s)	50, 159, 234, 290
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	1 cut(s)	94
MaeIII	GTNAC	2 cut(s)	67, 260
MalI	GATC	3 cut(s)	144, 246, 303
MboI	GATC	3 cut(s)	142, 244, 301
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	3 cut(s)	9, 31, 192
MmeI	TCCRAC	2 cut(s)	184, 259
MnlI	CCTC	4 cut(s)	153, 162, 228, 305
MwoI	GCNNNNNNNGC	3 cut(s)	33, 42, 104
NdeII	GATC	3 cut(s)	142, 244, 301
NlaIII	CATG	1 cut(s)	258
NlaIV	GGNNCC	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	276
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	3 cut(s)	142, 244, 301
Sau96I	GGNCC	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	3 cut(s)	78, 177, 276
SfaNI	GCATC	1 cut(s)	94
SinI	GGWCC	1 cut(s)	206
Sse9I	AATT	3 cut(s)	9, 31, 192
SsiI	CCGC	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	276
TaaI	ACNGT	2 cut(s)	67, 127
TasI	AATT	3 cut(s)	9, 31, 192
TscAI	CASTG	1 cut(s)	153
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	17, 243
TspRI	CASTG	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.