Prupe.7G158500_v2.0.a1

Heavy-metal-associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001393
Physical Location & Seq
Forward (+)
16609874 .. 16611069
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G158500.1

Sequence Viewer

Length: 360 bp
ATGGTACAAAGGACTGTCCTGAAGGTTGACATATCATGCCTAAAATGCAAGAAGAAGCTGATCAAGGCAGTGAGTGGCCTGGAAGGTGTGGATAAAGTTGAAGCTGATGCAGCCAAGGGAACTTTGACTGTAACAGGCGAATGTGATCCATATGAAATAATAGTTCGCACTAGAAAAGTTGGCAAATTTGTTGAAGTAGTGAGTATTGGGCCTCCTCCTGCTCCACCCAAACCTCCAGAGAAAAAGCCTGAACCGAAGAAGGAGAAACCAGACCCGAGGCCCCAACATATTTGCATGCCCTGTGACTATGCTATTGTAAGGGCATGTGATGAGCCCAACCCCTCTTGCTCTATCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

120

Amino Acids

13.01

Weight (kDa)

8.84

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 1 cut(s) 6
AgsI TTSAA 2 cut(s) 101, 194
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 2 cut(s) 58, 104
AluI AGCT 2 cut(s) 58, 104
AlwI GGATC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 274
AoxI GGCC 3 cut(s) 76, 209, 278
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 185
AspS9I GGNCC 2 cut(s) 209, 279
AvaI CYCGRG 1 cut(s) 274
BanII GRGCYC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 80
BclI TGATCA 1 cut(s) 60
BfaI CTAG 1 cut(s) 171
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 209, 279
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 114, 275
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 114, 275
BseRI GAGGAG 1 cut(s) 204
BseXI GCAGC 1 cut(s) 122
BshFI GGCC 3 cut(s) 78, 211, 280
BsiHKCI CYCGRG 1 cut(s) 274
BsnI GGCC 3 cut(s) 78, 211, 280
BsoBI CYCGRG 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 2 cut(s) 60, 145
BspANI GGCC 3 cut(s) 78, 211, 280
BspLI GGNNCC 1 cut(s) 281
BspPI GGATC 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 114, 275
BssMI GATC 2 cut(s) 60, 145
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 16, 130
BstC8I GCNNGC 1 cut(s) 296
BstKTI GATC 2 cut(s) 63, 148
BstMBI GATC 2 cut(s) 60, 145
BstMWI GCNNNNNNNGC 2 cut(s) 45, 110
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 2 cut(s) 298, 327
BstSCI CCNGG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 122
BsuRI GGCC 3 cut(s) 78, 211, 280
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 209, 279
Csp6I GTAC 1 cut(s) 5
CviAII CATG 4 cut(s) 36, 295, 324, 355
CviJI RGCY 8 cut(s) 58, 78, 104, 113, 211, 247, 280, 334
CviKI_1 RGCY 8 cut(s) 58, 78, 104, 113, 211, 247, 280, 334
CviQI GTAC 1 cut(s) 5
DpnI GATC 2 cut(s) 62, 147
DpnII GATC 2 cut(s) 60, 145
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 4 cut(s) 39, 298, 327, 358
FaiI YATR 9 cut(s) 32, 37, 151, 153, 288, 296, 309, 325, 356
FatI CATG 4 cut(s) 35, 294, 323, 354
FauNDI CATATG 1 cut(s) 151
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 111
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 171
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 3 cut(s) 78, 211, 280
Hin1II CATG 4 cut(s) 39, 298, 327, 358
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 28
Hpy188III TCNNGA 2 cut(s) 19, 236
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 3 cut(s) 16, 77, 253
HpyCH4III ACNGT 2 cut(s) 16, 130
HpyCH4V TGCA 3 cut(s) 48, 110, 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 110
Hsp92II CATG 4 cut(s) 39, 298, 327, 358
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 2 cut(s) 60, 145
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 9 cut(s) 32, 65, 92, 120, 231, 249, 261, 282, 313
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 130, 302
MalI GATC 2 cut(s) 62, 147
MboI GATC 2 cut(s) 60, 145
MboII GAAGA 2 cut(s) 64, 268
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 1 cut(s) 185
MnlI CCTC 5 cut(s) 222, 225, 243, 270, 352
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 45, 110
NdeI CATATG 1 cut(s) 151
NdeII GATC 2 cut(s) 60, 145
NlaIII CATG 4 cut(s) 39, 298, 327, 358
NlaIV GGNNCC 1 cut(s) 281
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 2 cut(s) 298, 327
PaeI GCATGC 1 cut(s) 298
PkrI GCNGC 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 2 cut(s) 209, 279
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 2 cut(s) 60, 145
Sau96I GGNCC 2 cut(s) 209, 279
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 1 cut(s) 336
SetI ASST 5 cut(s) 27, 60, 88, 106, 235
SfaNI GCATC 1 cut(s) 97
SphI GCATGC 1 cut(s) 298
Sse9I AATT 1 cut(s) 185
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 16, 130
TasI AATT 1 cut(s) 185
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 1 cut(s) 75
XapI RAATTY 1 cut(s) 185
XceI RCATGY 2 cut(s) 298, 327
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.