Rw6G019070

Heavy-metal-associated domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
38032804 .. 38033420
617 bp
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UTR
Exon/CDS
Intron
Rw6G019070.1

Sequence Viewer

Length: 270 bp
ATGAAGAAAATTGTAATAAAAGTCAGCATAAATTGCCAGATCTGCAAGACAGATGTGTTGAAAGCCGTTACCAAGCTTCAAGGAAAAGATATTGTAGCCGTAGATGGTCAGAAGGGAACATTGACTGTCGTAGGAGATGTTGATCCAGTGTTGGTGGTGAGACGACTAAGGAAGGTTGGGAAAGTAGCAGAAATTGTGAGTGTTGGAACCCCAAAGCTTGTTGGACTCAAATACGTTCCTTATGAGGGTGGAGGGTGCCATATTCTTTGA

Protein Analysis

89

Amino Acids

9.5

Weight (kDa)

9.68

Isoelectric Point (pI)

15.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 7 - 59 4.4e-07 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 255
AclWI GGATC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 2 cut(s) 61, 80
AluBI AGCT 2 cut(s) 76, 217
AluI AGCT 2 cut(s) 76, 217
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 169
BanI GGYRCC 1 cut(s) 255
BccI CCATC 1 cut(s) 98
BceAI ACGGC 2 cut(s) 50, 83
BcoDI GTCTC 1 cut(s) 154
BglII AGATCT 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 208, 257
BsaBI GATNNNNATC 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 146
Bse8I GATNNNNATC 1 cut(s) 141
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 154
BsmBI CGTCTC 1 cut(s) 154
Bsp143I GATC 2 cut(s) 39, 142
BspLI GGNNCC 2 cut(s) 208, 257
BspPI GGATC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 255
BsrI ACTGG 1 cut(s) 146
BssMI GATC 2 cut(s) 39, 142
Bst4CI ACNGT 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 167
BstKTI GATC 2 cut(s) 42, 145
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 2 cut(s) 39, 142
BstMWI GCNNNNNNNGC 2 cut(s) 33, 42
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 153
CviJI RGCY 4 cut(s) 65, 76, 98, 217
CviKI_1 RGCY 4 cut(s) 65, 76, 98, 217
DdeI CTNAG 1 cut(s) 167
DpnI GATC 2 cut(s) 41, 144
DpnII GATC 2 cut(s) 39, 142
Esp3I CGTCTC 1 cut(s) 154
FaiI YATR 3 cut(s) 29, 243, 261
HindIII AAGCTT 2 cut(s) 74, 215
HinfI GANTC 1 cut(s) 225
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 111
HpyAV CCTTC 2 cut(s) 106, 166
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 42
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 234
Kzo9I GATC 2 cut(s) 39, 142
LpnPI CCDG 2 cut(s) 50, 159
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 41, 144
MboI GATC 2 cut(s) 39, 142
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 39
MluCI AATT 3 cut(s) 9, 31, 192
MlyI GAGTC 1 cut(s) 219
MmeI TCCRAC 2 cut(s) 184, 202
MnlI CCTC 2 cut(s) 238, 245
MwoI GCNNNNNNNGC 2 cut(s) 33, 42
NdeII GATC 2 cut(s) 39, 142
NlaIV GGNNCC 2 cut(s) 208, 257
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 208, 257
PsuI RGATCY 1 cut(s) 39
Sau3AI GATC 2 cut(s) 39, 142
SchI GAGTC 1 cut(s) 219
SetI ASST 4 cut(s) 78, 177, 219, 237
SgeI CNNG 6 cut(s) 49, 58, 85, 92, 158, 230
Sse9I AATT 3 cut(s) 9, 31, 192
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 237
TasI AATT 3 cut(s) 9, 31, 192
TscAI CASTG 1 cut(s) 153
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.