Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Forward (+)

29704829 .. 29705285

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013314

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTATTTGCATATGCATCACAGGAAATTGTGATAAAAGTCAATATTAATTGCCAGATTTGCAAGACAGATGTACTAAAAGCCGTTGCCAAGCTTACAGGAATAACTATGGTGGTAGTAGATGGTGAGAAGGGATTACTGAGAGTTGTGGGAGATGTTGATCCAGTGTTGGTGGTGAAACGACTAAGGAAGGCCAGAAAAGTAGCAGAAATTATAAGTGTTGGACCGCCGAAGCCTTCGGAACCTAAGCAAATTCCTCCTGTATTCCTTCTTCCTCCATGTTGTAATCAGTGTGAGCTTGTTGGGGTCATCAGCTATGCTCCTCATTTTGATGGTGGAGTGTGCAACATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

119

Amino Acids

12.72

Weight (kDa)

8.8

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	12 - 64	4.4e-09	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	215
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	252
AfaI	GTAC	1 cut(s)	75
AluBI	AGCT	3 cut(s)	94, 298, 315
AluI	AGCT	3 cut(s)	94, 298, 315
AlwI	GGATC	1 cut(s)	155
AoxI	GGCC	1 cut(s)	192
ApoI	RAATTY	1 cut(s)	252
AseI	ATTAAT	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	137, 187
AvaII	GGWCC	1 cut(s)	224
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
BccI	CCATC	2 cut(s)	116, 326
BceAI	ACGGC	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	243
BmsI	GCATC	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	246
BsaBI	GATNNNNATC	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	159
BseJI	GATNNNNATC	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	164
BssMI	GATC	1 cut(s)	160
BstDEI	CTNAG	3 cut(s)	140, 185, 246
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	194
BtsIMutI	CAGTG	2 cut(s)	171, 296
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	1 cut(s)	279
CviJI	RGCY	6 cut(s)	83, 94, 194, 235, 298, 315
CviKI_1	RGCY	6 cut(s)	83, 94, 194, 235, 298, 315
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	3 cut(s)	140, 185, 246
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	224
EcoT22I	ATGCAT	1 cut(s)	19
FaeI	CATG	1 cut(s)	282
FaiI	YATR	6 cut(s)	13, 15, 110, 215, 280, 318
FatI	CATG	1 cut(s)	278
FauNDI	CATATG	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	282
HindIII	AAGCTT	1 cut(s)	92
HphI	GGTGA	2 cut(s)	137, 187
Hpy188I	TCNGA	1 cut(s)	241
HpyAV	CCTTC	4 cut(s)	124, 184, 246, 278
HpyCH4V	TGCA	4 cut(s)	11, 17, 63, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpyF3I	CTNAG	3 cut(s)	140, 185, 246
Hsp92II	CATG	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	6 cut(s)	8, 68, 84, 177, 208, 273
LweI	GCATC	1 cut(s)	26
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	1 cut(s)	263
MluCI	AATT	4 cut(s)	27, 49, 210, 252
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	3 cut(s)	267, 285, 333
Mph1103I	ATGCAT	1 cut(s)	19
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	60
NdeI	CATATG	1 cut(s)	13
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	1 cut(s)	243
NsiI	ATGCAT	1 cut(s)	19
PshBI	ATTAAT	1 cut(s)	48
PsiI	TTATAA	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	224
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	224
SetI	ASST	4 cut(s)	96, 247, 300, 317
SfaNI	GCATC	1 cut(s)	26
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	330
Sse9I	AATT	4 cut(s)	27, 49, 210, 252
SsiI	CCGC	1 cut(s)	227
SspI	AATATT	1 cut(s)	46
TasI	AATT	4 cut(s)	27, 49, 210, 252
TatI	WGTACW	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	2 cut(s)	171, 296
TspRI	CASTG	2 cut(s)	171, 296
VpaK11BI	GGWCC	1 cut(s)	224
VspI	ATTAAT	1 cut(s)	48
XapI	RAATTY	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.