Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Reverse (-)

41807931 .. 41819274

Gene Structure 11344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG221500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAAGAAAACTGTGGTAAAAGTTAATATTAATTGCCAGATTTGCAAGACAGATTCACTAAAAGCCGCTACAAAGCTTACAGGAATAGATATTGTAGCCGTAGATGGTCAGAAGGGAACATTGACGGTCGTAGGAGATGTTGATCCAGTGATGGTGGTGAGACGACTAAGGAAGGTTGGGAAAGTAGCAGAAATTGTGAGTGTTGGACCCCCAAAGGCTTCTGAACCTAAGCCTCTTATAGTCCTTGATCTCCCTTTATGCTGTAATCAATGTCAGCTTGTTGGATTCAAATATGTTCCTTATGAGGGTGGAGGGTGCCATATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

109

Amino Acids

11.63

Weight (kDa)

9.11

Isoelectric Point (pI)

24.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	6 - 59	4.4e-06	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	315
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	289
AluBI	AGCT	2 cut(s)	76, 277
AluI	AGCT	2 cut(s)	76, 277
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	137
AseI	ATTAAT	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	315
BccI	CCATC	2 cut(s)	98, 145
BceAI	ACGGC	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	2 cut(s)	208, 317
Bpu10I	CCTNAGC	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	141
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	315
BsiEI	CGRYCG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	142, 247
BspACI	CCGC	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	208, 317
BspPI	GGATC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	146
BssMI	GATC	2 cut(s)	142, 247
Bst4CI	ACNGT	2 cut(s)	13, 127
BstDEI	CTNAG	2 cut(s)	167, 228
BstKTI	GATC	2 cut(s)	145, 250
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	2 cut(s)	142, 247
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	206
CviJI	RGCY	6 cut(s)	65, 76, 98, 218, 232, 277
CviKI_1	RGCY	6 cut(s)	65, 76, 98, 218, 232, 277
DdeI	CTNAG	2 cut(s)	167, 228
DpnI	GATC	2 cut(s)	144, 249
DpnII	GATC	2 cut(s)	142, 247
Eco47I	GGWCC	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	154
FaiI	YATR	5 cut(s)	239, 259, 294, 303, 321
Fnu4HI	GCNGC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	2 cut(s)	53, 285
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	111, 223
HpyAV	CCTTC	2 cut(s)	106, 166
HpyCH4III	ACNGT	2 cut(s)	13, 127
HpyCH4V	TGCA	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	2 cut(s)	167, 228
Kzo9I	GATC	2 cut(s)	142, 247
LpnPI	CCDG	3 cut(s)	50, 66, 159
MalI	GATC	2 cut(s)	144, 249
MboI	GATC	2 cut(s)	142, 247
MboII	GAAGA	1 cut(s)	16
MluCI	AATT	2 cut(s)	31, 192
MmeI	TCCRAC	2 cut(s)	184, 262
MnlI	CCTC	3 cut(s)	243, 298, 305
MseI	TTAA	2 cut(s)	24, 30
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeII	GATC	2 cut(s)	142, 247
NlaIV	GGNNCC	2 cut(s)	208, 317
PfeI	GAWTC	2 cut(s)	53, 285
PkrI	GCNGC	1 cut(s)	67
PshBI	ATTAAT	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	208, 317
PspPI	GGNCC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	24, 30
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	2 cut(s)	142, 247
Sau96I	GGNCC	1 cut(s)	206
SetI	ASST	4 cut(s)	78, 177, 229, 279
SgeI	CNNG	6 cut(s)	49, 58, 93, 158, 257, 290
SinI	GGWCC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	31, 192
SsiI	CCGC	1 cut(s)	66
SspI	AATATT	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	13, 127
TasI	AATT	2 cut(s)	31, 192
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	53, 285
Tru1I	TTAA	2 cut(s)	24, 30
Tru9I	TTAA	2 cut(s)	24, 30
TscAI	CASTG	1 cut(s)	153
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	206
VspI	ATTAAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.