Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Reverse (-)

12912826 .. 12914102

Gene Structure 1277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14740.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATCTCAGACCACCCTCAGTGTCGACTTCAATATAAAAAGTGGTTCGATTCGGACGTTCGGTGTTGTATCCACCACGGGTTCTTGCATTTACAAGCCAATAACATGAAGGAAATTGTGATAAAAGTCGATATTAATTGCCAGATTTGCAAGACAGATGTACTGAAAGCCGTTGCCAAGCTTACAGGAATAACTATGGTGGTTGTGGATGGTGAGAAGGGAACACTGAGAGTTGTGGGGGATGTTGATCCAGTGTTGGTGGTGAAACGACTAAGGAAGGCCGGAAAAGTTGCAGAAATCATAAGTGTTGGACCGCCGAAGCCCTCGCAACCTAAGCAAATCCCATCTGTATTCCTTCTTCCTCCATGTTGTAATCAGTGTGAGCTTGTTGGTGTAATCAGCTATGCTTCTTATTTTGATGGTGGAGCGTGCACCATCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

148

Amino Acids

16.16

Weight (kDa)

8.74

Isoelectric Point (pI)

30.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	22 - 77	2.8e-10	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	25
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	1 cut(s)	242
AfaI	GTAC	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	32
AluBI	AGCT	3 cut(s)	181, 385, 402
AluI	AGCT	3 cut(s)	181, 385, 402
Alw21I	GWGCWC	1 cut(s)	434
Alw44I	GTGCAC	1 cut(s)	430
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	1 cut(s)	279
ApaLI	GTGCAC	1 cut(s)	430
AseI	ATTAAT	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	224, 274
AvaII	GGWCC	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	434
BarI	GAAGNNNNNNTAC	2 cut(s)	342, 374
Bbv12I	GWGCWC	1 cut(s)	434
BccI	CCATC	4 cut(s)	203, 352, 413, 443
BceAI	ACGGC	1 cut(s)	155
BciVI	GTATCC	1 cut(s)	80
BfuI	GTATCC	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
Bpu10I	CCTNAGC	1 cut(s)	333
BsaBI	GATNNNNATC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	3 cut(s)	214, 247, 435
BseJI	GATNNNNATC	1 cut(s)	246
BseMII	CTCAG	3 cut(s)	21, 32, 218
BseNI	ACTGG	1 cut(s)	251
BseSI	GKGCMC	1 cut(s)	434
BshFI	GGCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	282
BsnI	GGCC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	2 cut(s)	3, 247
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	3 cut(s)	20, 31, 219
BspPI	GGATC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	2 cut(s)	3, 247
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	5 cut(s)	7, 18, 227, 272, 333
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	3 cut(s)	214, 247, 435
BstKTI	GATC	2 cut(s)	6, 250
BstMBI	GATC	2 cut(s)	3, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 334
BstSLI	GKGCMC	1 cut(s)	434
BsuI	GTATCC	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	3 cut(s)	214, 247, 435
BtsIMutI	CAGTG	4 cut(s)	26, 224, 258, 383
Cac8I	GCNNGC	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	2 cut(s)	106, 366
CviJI	RGCY	7 cut(s)	98, 170, 181, 281, 322, 385, 402
CviKI_1	RGCY	7 cut(s)	98, 170, 181, 281, 322, 385, 402
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	5 cut(s)	7, 18, 227, 272, 333
DpnI	GATC	2 cut(s)	5, 249
DpnII	GATC	2 cut(s)	3, 247
Eco47I	GGWCC	1 cut(s)	311
FaeI	CATG	2 cut(s)	109, 369
FaiI	YATR	6 cut(s)	36, 107, 197, 302, 367, 405
FatI	CATG	2 cut(s)	105, 365
FblI	GTMKAC	1 cut(s)	25
FokI	GGATG	3 cut(s)	221, 254, 422
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	2 cut(s)	109, 369
HincII	GTYRAC	1 cut(s)	26
HindII	GTYRAC	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	2 cut(s)	224, 274
Hpy166II	GTNNAC	2 cut(s)	26, 432
Hpy188I	TCNGA	2 cut(s)	10, 55
Hpy8I	GTNNAC	2 cut(s)	26, 432
HpyAV	CCTTC	4 cut(s)	103, 211, 271, 365
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	4 cut(s)	88, 150, 293, 432
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 334
HpyF3I	CTNAG	5 cut(s)	7, 18, 227, 272, 333
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	109, 369
Kzo9I	GATC	2 cut(s)	3, 247
LmnI	GCTCC	1 cut(s)	425
LpnPI	CCDG	4 cut(s)	155, 171, 264, 295
MaeII	ACGT	1 cut(s)	57
MalI	GATC	2 cut(s)	5, 249
MboI	GATC	2 cut(s)	3, 247
MboII	GAAGA	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	2 cut(s)	114, 136
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	3 cut(s)	27, 334, 372
MseI	TTAA	1 cut(s)	135
MspI	CCGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	147, 334
NdeII	GATC	2 cut(s)	3, 247
NlaIII	CATG	2 cut(s)	109, 369
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	50
PshBI	ATTAAT	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	311
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SalI	GTCGAC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	3, 247
Sau96I	GGNCC	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	5 cut(s)	60, 183, 334, 387, 404
SinI	GGWCC	1 cut(s)	311
Sse9I	AATT	2 cut(s)	114, 136
SsiI	CCGC	1 cut(s)	314
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	3 cut(s)	25, 48, 129
TasI	AATT	2 cut(s)	114, 136
TatI	WGTACW	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	4 cut(s)	26, 231, 258, 383
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	4 cut(s)	26, 231, 258, 383
VneI	GTGCAC	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	311
VspI	ATTAAT	1 cut(s)	135
XmiI	GTMKAC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.