Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Forward (+)

61297233 .. 61298531

Gene Structure 1299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG419600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAAGTTAGTCGCTACAGTAGAAGGGATAACTTCCATTGTCCTGGACCCGTCAAAAAATACAGTGACAGTAACCGGGGAAGCCGATCCGGTAAAGGTCATTCACAAAGTGAGGAAGTTCAGAAAATCTGCTTCGGTTGTGAGCATCGGTCCTCCAAAGCCGGAAGAGAAGAAGGATGAGAAGAAAGACAAAGACGGCCATGGCCTTGTTCCTTACATTCCAAGGACATGTCAAAGATGTGATGTCTGGTATGTGGTTGCTGAAGATGACTCGGATTTCCAGAGCGGCGGGGAGTCTTCTTCTCAGTGCAGGCTCCGGTTCTTTCTGGTCGAGGAGGCGCCGAGGCCGGGGAACAGGCAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

121

Amino Acids

13.41

Weight (kDa)

8.45

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	2 - 39	6.4e-06	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AccBSI	CCGCTC	1 cut(s)	285
AciI	CCGC	2 cut(s)	285, 288
AclWI	GGATC	1 cut(s)	80
AcoI	YGGCCR	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	338
AdeI	CACNNNGTG	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	3 cut(s)	196, 202, 344
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	2 cut(s)	46, 149
AsuC2I	CCSGG	2 cut(s)	76, 348
AvaII	GGWCC	2 cut(s)	46, 149
BanI	GGYRCC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	288
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	44
BcnI	CCSGG	2 cut(s)	76, 348
BfmI	CTRYAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	341
BisI	GCNGC	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	287
Bme1390I	CCNGG	3 cut(s)	44, 76, 348
Bme18I	GGWCC	2 cut(s)	46, 149
BmgT120I	GGNCC	2 cut(s)	46, 149
BmiI	GGNNCC	3 cut(s)	48, 314, 339
BmrFI	CCNGG	3 cut(s)	44, 76, 348
BmsI	GCATC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	288
BpuMI	CCSGG	2 cut(s)	76, 348
BsaHI	GRCGYC	1 cut(s)	338
BsaJI	CCNNGG	5 cut(s)	75, 199, 221, 341, 347
BsaWI	WCCGGW	2 cut(s)	88, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	5 cut(s)	75, 199, 221, 341, 347
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	347
BsgI	GTGCAG	1 cut(s)	328
BshFI	GGCC	3 cut(s)	198, 204, 346
BshNI	GGYRCC	1 cut(s)	337
BsiSI	CCGG	5 cut(s)	75, 89, 161, 316, 347
BslI	CCNNNNNNNGG	1 cut(s)	347
BsnI	GGCC	3 cut(s)	198, 204, 346
Bsp143I	GATC	1 cut(s)	85
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	2 cut(s)	285, 288
BspANI	GGCC	3 cut(s)	198, 204, 346
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	3 cut(s)	48, 314, 339
BspPI	GGATC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	337
BsrBI	CCGCTC	1 cut(s)	285
BssECI	CCNNGG	5 cut(s)	75, 199, 221, 341, 347
BssMI	GATC	1 cut(s)	85
BssNI	GRCGYC	1 cut(s)	338
BssT1I	CCWWGG	2 cut(s)	199, 221
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	3 cut(s)	19, 64, 70
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	311, 360
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	181
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	3 cut(s)	42, 74, 346
BstSFI	CTRYAG	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	288
BstXI	CCANNNNNNTGG	1 cut(s)	43
BsuRI	GGCC	3 cut(s)	198, 204, 346
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	69, 311
Cac8I	GCNNGC	2 cut(s)	311, 360
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	46, 149
CviAII	CATG	2 cut(s)	200, 228
CviJI	RGCY	7 cut(s)	83, 160, 198, 204, 313, 346, 362
CviKI_1	RGCY	7 cut(s)	83, 160, 198, 204, 313, 346, 362
DdeI	CTNAG	1 cut(s)	303
DinI	GGCGCC	1 cut(s)	339
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DraIII	CACNNNGTG	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	199, 221
Eco47I	GGWCC	2 cut(s)	46, 149
Eco57I	CTGAAG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	2 cut(s)	199, 221
EgeI	GGCGCC	1 cut(s)	339
EheI	GGCGCC	1 cut(s)	339
ErhI	CCWWGG	2 cut(s)	199, 221
FaeI	CATG	2 cut(s)	203, 231
FaiI	YATR	3 cut(s)	201, 229, 252
FatI	CATG	2 cut(s)	199, 227
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	286
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	286
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	198, 204, 346
HapII	CCGG	5 cut(s)	75, 89, 161, 316, 347
HhaI	GCGC	1 cut(s)	340
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	2 cut(s)	203, 231
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	2 cut(s)	269, 293
HpaII	CCGG	5 cut(s)	75, 89, 161, 316, 347
Hpy188I	TCNGA	2 cut(s)	122, 274
Hpy188III	TCNNGA	1 cut(s)	280
HpyAV	CCTTC	2 cut(s)	17, 166
HpyCH4III	ACNGT	3 cut(s)	19, 64, 70
HpyCH4V	TGCA	1 cut(s)	309
HpyF3I	CTNAG	1 cut(s)	303
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	2 cut(s)	203, 231
HspAI	GCGC	1 cut(s)	338
KasI	GGCGCC	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	318
LweI	GCATC	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	64, 70
MalI	GATC	1 cut(s)	87
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	1 cut(s)	85
MboII	GAAGA	6 cut(s)	176, 181, 193, 275, 288, 291
Mly113I	GGCGCC	1 cut(s)	338
MlyI	GAGTC	2 cut(s)	263, 302
MnlI	CCTC	5 cut(s)	105, 162, 325, 328, 336
MspI	CCGG	5 cut(s)	75, 89, 161, 316, 347
MspR9I	CCNGG	3 cut(s)	44, 76, 348
MvaI	CCWGG	1 cut(s)	44
NarI	GGCGCC	1 cut(s)	338
NciI	CCSGG	2 cut(s)	76, 348
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	203, 231
NlaIV	GGNNCC	3 cut(s)	48, 314, 339
NmeAIII	GCCGAG	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	231
PciI	ACATGT	1 cut(s)	227
PfoI	TCCNGGA	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	287
PleI	GAGTC	2 cut(s)	263, 301
PluTI	GGCGCC	1 cut(s)	341
PpsI	GAGTC	2 cut(s)	263, 301
PscI	ACATGT	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	3 cut(s)	48, 314, 339
PspPI	GGNCC	2 cut(s)	46, 149
SatI	GCNGC	1 cut(s)	286
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	2 cut(s)	46, 149
SchI	GAGTC	2 cut(s)	263, 302
ScrFI	CCNGG	3 cut(s)	44, 76, 348
SetI	ASST	2 cut(s)	99, 364
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	15
SfoI	GGCGCC	1 cut(s)	339
SinI	GGWCC	2 cut(s)	46, 149
SsiI	CCGC	2 cut(s)	285, 288
SspDI	GGCGCC	1 cut(s)	337
StyD4I	CCNGG	3 cut(s)	42, 74, 346
StyI	CCWWGG	2 cut(s)	199, 221
TaaI	ACNGT	3 cut(s)	19, 64, 70
TaqI	TCGA	1 cut(s)	330
TaqII	GACCGA	1 cut(s)	137
TauI	GCSGC	1 cut(s)	288
TscAI	CASTG	2 cut(s)	69, 311
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	69, 311
VpaK11BI	GGWCC	2 cut(s)	46, 149
XceI	RCATGY	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.