Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005546.1

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Reverse (-)

3691 .. 3939

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005546.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

atggtggtagtagatggtgagaagggattactgagagttgtgggagatgttgatccagtgttggtggtgaaacgactaaggaaggccagaaaagtagcagaaattataagtgttggaccgccgaagccttcggaacctaagcaaattccttctctattccttcttcctccatgttgtaatcagtgtgagcttgttggggtcatcagctatgctcctcattttgatggtggagtgtgcaacatcctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

82

Amino Acids

8.82

Weight (kDa)

8.43

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	107
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	144
AluBI	AGCT	2 cut(s)	190, 207
AluI	AGCT	2 cut(s)	190, 207
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	29, 79
AvaII	GGWCC	1 cut(s)	116
BccI	CCATC	2 cut(s)	8, 218
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	138
BsaBI	GATNNNNATC	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	56
Bse8I	GATNNNNATC	1 cut(s)	51
BseGI	GGATG	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	56
BseRI	GAGGAG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	52
BstDEI	CTNAG	3 cut(s)	32, 77, 138
BstF5I	GGATG	1 cut(s)	240
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	63, 188
Cfr13I	GGNCC	1 cut(s)	116
CviAII	CATG	1 cut(s)	171
CviJI	RGCY	4 cut(s)	86, 127, 190, 207
CviKI_1	RGCY	4 cut(s)	86, 127, 190, 207
DdeI	CTNAG	3 cut(s)	32, 77, 138
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	116
FaeI	CATG	1 cut(s)	174
FaiI	YATR	3 cut(s)	107, 172, 210
FatI	CATG	1 cut(s)	170
FokI	GGATG	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	174
HphI	GGTGA	2 cut(s)	29, 79
Hpy188I	TCNGA	1 cut(s)	133
HpyAV	CCTTC	5 cut(s)	16, 76, 138, 159, 170
HpyCH4V	TGCA	1 cut(s)	237
HpyF3I	CTNAG	3 cut(s)	32, 77, 138
Hsp92II	CATG	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	2 cut(s)	69, 100
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	1 cut(s)	155
MluCI	AATT	2 cut(s)	102, 144
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	2 cut(s)	177, 225
MslI	CAYNNNNRTG	1 cut(s)	222
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	1 cut(s)	135
PsiI	TTATAA	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	116
SetI	ASST	3 cut(s)	139, 192, 209
SgeI	CNNG	4 cut(s)	68, 99, 183, 203
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	102, 144
SsiI	CCGC	1 cut(s)	119
TasI	AATT	2 cut(s)	102, 144
TscAI	CASTG	2 cut(s)	63, 188
TspRI	CASTG	2 cut(s)	63, 188
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.