Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Reverse (-)

1365396 .. 1367392

Gene Structure 1997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1023400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAGCTCCTCGGCAGCCTATAGATTCTTAATCAAGATCATGTCGAAGAAAACTGTGGTGTCAGTGGAACTGATGTGTCCAAAGTGCAGGAAAAAGGTGATGAAGTTAATTGCAACCGTAGAAGGGGTAGCTTCCATTGTCCTCGACCCGTCAAAAAATACGGTGACGGTAACTGGGGAAGCCGATCCGGTAAAGATTATCAAGAAGGTGAGGAAATTAAGAAAAAATGCTGCGGTTGTGAGTATCGGTCCTCCGCAGGCTGAGAAGAAGGATGAGAAGAAGGATGGGAAGAAGGACGAGAAGAAGGACATTGTTCCATACAACCCAACGCCATGTCAAAGATGTGATGTTTGGTACGTGATTCCTGAACATGGTTACGGTTACTGTTCCGTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0006873 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009791 GO:0009987 GO:0010264 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019637 GO:0019725 GO:0019751 GO:0022622 GO:0030002 GO:0030320 GO:0030643 GO:0032501 GO:0032502 GO:0032942 GO:0032958 GO:0033517 GO:0035299 GO:0040007 GO:0042592 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046165 GO:0046173 GO:0046835 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051765 GO:0052746 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0071704 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0090407 GO:0090696 GO:0098542 GO:0098771 GO:0099402 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

HMA Ins_P5_2-kin

Protein Analysis

133

Amino Acids

14.7

Weight (kDa)

9.57

Isoelectric Point (pI)

15.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	20 - 73	1.9e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	233, 254
AclWI	GGATC	1 cut(s)	179
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	2 cut(s)	123, 371
AluBI	AGCT	2 cut(s)	6, 131
AluI	AGCT	2 cut(s)	6, 131
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	14, 230
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	3 cut(s)	109, 175, 220
AvaII	GGWCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	26, 217
BccI	CCATC	1 cut(s)	278
BfmI	CTRYAG	1 cut(s)	19
BisI	GCNGC	2 cut(s)	15, 231
BlsI	GCNGC	2 cut(s)	16, 232
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	248
BmrI	ACTGGG	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 371
Bse1I	ACTGG	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	2 cut(s)	277, 289
BseLI	CCNNNNNNNGG	2 cut(s)	123, 371
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	26, 217
BsgI	GTGCAG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	123, 371
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	36, 184
BspACI	CCGC	2 cut(s)	233, 254
BspCNI	CTCAG	1 cut(s)	253
BspPI	GGATC	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	2 cut(s)	36, 184
Bst4CI	ACNGT	6 cut(s)	55, 118, 163, 169, 380, 386
BstBAI	YACGTR	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	277, 289
BstKTI	GATC	2 cut(s)	39, 187
BstMBI	GATC	2 cut(s)	36, 184
BstSFI	CTRYAG	1 cut(s)	19
BstV1I	GCAGC	2 cut(s)	26, 217
BtsCI	GGATG	2 cut(s)	277, 289
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	3 cut(s)	40, 333, 371
CviJI	RGCY	5 cut(s)	6, 17, 131, 182, 260
CviKI_1	RGCY	5 cut(s)	6, 17, 131, 182, 260
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	2 cut(s)	38, 186
DpnII	GATC	2 cut(s)	36, 184
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	248
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	3 cut(s)	43, 336, 374
FaiI	YATR	5 cut(s)	21, 41, 319, 334, 372
FatI	CATG	3 cut(s)	39, 332, 370
Fnu4HI	GCNGC	2 cut(s)	15, 231
FokI	GGATG	2 cut(s)	284, 296
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	15, 231
GluI	GCNGC	2 cut(s)	15, 231
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	3 cut(s)	43, 336, 374
HinfI	GANTC	2 cut(s)	24, 361
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	3 cut(s)	109, 175, 220
Hpy188III	TCNNGA	3 cut(s)	34, 202, 365
HpyAV	CCTTC	6 cut(s)	116, 199, 262, 274, 286, 298
HpyCH4III	ACNGT	6 cut(s)	55, 118, 163, 169, 380, 386
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	2 cut(s)	87, 113
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	3 cut(s)	43, 336, 374
Kzo9I	GATC	2 cut(s)	36, 184
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	5 cut(s)	73, 159, 201, 242, 378
Lsp1109I	GCAGC	2 cut(s)	26, 217
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	4 cut(s)	163, 169, 374, 380
MalI	GATC	2 cut(s)	38, 186
MboI	GATC	2 cut(s)	36, 184
MboII	GAAGA	5 cut(s)	58, 277, 289, 301, 313
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	108, 215
MnlI	CCTC	4 cut(s)	19, 152, 204, 261
MseI	TTAA	3 cut(s)	29, 107, 218
MspI	CCGG	1 cut(s)	188
NdeII	GATC	2 cut(s)	36, 184
NlaIII	CATG	3 cut(s)	43, 336, 374
NmuCI	GTSAC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	24, 361
PkrI	GCNGC	2 cut(s)	16, 232
Ppu21I	YACGTR	1 cut(s)	358
Psp124BI	GAGCTC	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	248
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	29, 107, 218
SatI	GCNGC	2 cut(s)	15, 231
Sau3AI	GATC	2 cut(s)	36, 184
Sau96I	GGNCC	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	5 cut(s)	8, 99, 133, 210, 360
SfcI	CTRYAG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	248
Sse9I	AATT	2 cut(s)	108, 215
SsiI	CCGC	2 cut(s)	233, 254
SstI	GAGCTC	1 cut(s)	8
TaaI	ACNGT	6 cut(s)	55, 118, 163, 169, 380, 386
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	44, 144
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	2 cut(s)	108, 215
TfiI	GAWTC	2 cut(s)	24, 361
Tru1I	TTAA	3 cut(s)	29, 107, 218
Tru9I	TTAA	3 cut(s)	29, 107, 218
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	2 cut(s)	14, 230
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	1 cut(s)	69
VpaK11BI	GGWCC	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.