Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Reverse (-)

39023763 .. 39027085

Gene Structure 3323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG217800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCCGGGTCTGCAACATCCTTTAAAGTCAGCATAAATTGCCAGATCTGCAAGACAGATGTGTTGAAAGCCGTTACCAAGCTTCAAGGAATAGATATTGTAGCCGTAGATGGTCAGAAGGGAACATTGACGGTCGTCGGAGATGTTGATCCAGTGATGGTGGTGAGACGACTAAGGAAGGTTGGGAAAGTAGCAGAAATTTCGAAGAAGCAAGTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

73

Amino Acids

7.8

Weight (kDa)

9.94

Isoelectric Point (pI)

11.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	8 - 61	1.1e-09	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	67, 86
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	143
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	175
AsuII	TTCGAA	1 cut(s)	203
BccI	CCATC	2 cut(s)	104, 151
BceAI	ACGGC	2 cut(s)	56, 89
BcgI	CGANNNNNNTGC	2 cut(s)	183, 217
BcnI	CCSGG	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	160
BglII	AGATCT	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	7
BoxI	GACNNNNGTC	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	7
BsaBI	GATNNNNATC	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	152
Bse8I	GATNNNNATC	1 cut(s)	147
BseGI	GGATG	1 cut(s)	17
BseJI	GATNNNNATC	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	6
BsmAI	GTCTC	1 cut(s)	160
BsmBI	CGTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	45, 148
BspANI	GGCC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	143
BspT104I	TTCGAA	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	152
BssMI	GATC	2 cut(s)	45, 148
Bst4CI	ACNGT	1 cut(s)	133
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	17
BstKTI	GATC	2 cut(s)	48, 151
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	2 cut(s)	45, 148
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 39, 48
BstPAI	GACNNNNGTC	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	159
CviJI	RGCY	4 cut(s)	5, 71, 82, 104
CviKI_1	RGCY	4 cut(s)	5, 71, 82, 104
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	2 cut(s)	47, 150
DpnII	GATC	2 cut(s)	45, 148
DraI	TTTAAA	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	3
Esp3I	CGTCTC	1 cut(s)	160
FaiI	YATR	1 cut(s)	35
FokI	GGATG	1 cut(s)	4
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	80
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	117, 140
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	112, 172
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	14, 51
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 39, 48
HpyF3I	CTNAG	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	45, 148
LpnPI	CCDG	3 cut(s)	19, 56, 165
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	47, 150
MboI	GATC	2 cut(s)	45, 148
MboII	GAAGA	1 cut(s)	217
MflI	RGATCY	1 cut(s)	45
MluCI	AATT	2 cut(s)	37, 198
MmeI	TCCRAC	1 cut(s)	118
MseI	TTAA	1 cut(s)	24
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	3 cut(s)	11, 39, 48
NciI	CCSGG	1 cut(s)	7
NdeII	GATC	2 cut(s)	45, 148
NspV	TTCGAA	1 cut(s)	203
PshAI	GACNNNNGTC	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	45, 148
ScrFI	CCNGG	1 cut(s)	7
SetI	ASST	3 cut(s)	84, 183, 221
SfuI	TTCGAA	1 cut(s)	203
SgeI	CNNG	7 cut(s)	18, 19, 55, 64, 91, 98, 164
Sse9I	AATT	2 cut(s)	37, 198
StyD4I	CCNGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	203
TasI	AATT	2 cut(s)	37, 198
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	159
TspRI	CASTG	1 cut(s)	159
XapI	RAATTY	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.