Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000469.1

Orthogroup ID

OG0001393

Physical Location & Seq

Genomic Coordinates Forward (+)

170918 .. 176959

Gene Structure 6042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000469.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atgccatatggacaaggcactcaggttggagtatatgtcgatcaagaatacaagagagctatagaaactcttcgcatacagtctgtgttgaggttttgtgaacaacctatcacagagcaagagctaattgagaaaactctctccaccttccccgtttcagccattgtggtatcaaagcaataccgtactgaagtcaatgttggacggatcatgagctttcatcagcttatcaatgttatatctgtagctgagaaacatgataatatactcgttgagaggaggctgatccgttatggaggtttaggtcgagtcgtcgagaggaggcggaggaggtatggaggtttaggtcgagaggagggtgatccggtatggaggtttagccgtttaggtcaagaggaggttgatccgttatggaggcttagatcgagtcgtcgagaggaggctgaggaggtatggaggactggaggtttaggtcgagaggaggctgatccgttatggaggtttaggtcgagtcgtcgagaggaggctgaggtcctgaggagctatggagccctcaaggtcctctatataaaagtggttcagacgttcagtgttgtctccactatccaccaccagttctcgcatttgcatgccaataacatgaaggaaattgtgataaaagtcaatattaattgccagatttgcaagacagatgtactaaaagccgttgccaagcttacaggaataactatggtggtagtagatggtgagaagggattactgagagttgtgggagatgttgatccagtgttggtggtgaaacgactaaggaaggccagaaaagtagcagaaattataagtgttggaccgccgaagccttcggaacctaagcaaaatattgcttctctattccttcttcctccatgttgtaatcagtgtgagcttgttggggtcatcagctatgctcctcattttgatggtggagtgtgcaacatcctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

326

Amino Acids

37.07

Weight (kDa)

9.38

Isoelectric Point (pI)

60.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05920 AT3G05920 AT5G26690
fragaria_vesca	FvH4_1g12761 FvH4_2g14710 FvH4_2g14740 FvH4_2g14740
malus_domestica	MD02G1143000.v1.1 MD08G1026800.v1.1 MD15G1023400.v1.1 MD15G1256400.v1.1
prunus_persica	Prupe.1G375500_v2.0.a1 Prupe.1G549900_v2.0.a1 Prupe.7G158500_v2.0.a1 Prupe.8G018500_v2.0.a1
pyrus_communis	pycom02g11240 pycom02g11290 pycom15g01940
rosa_chinensis	RchiOBHm_Chr2g0100871 RchiOBHm_Chr6g0301541
rosa_laevigata	RLG00000013314 RLG00000013315 RLG00000017020
rosa_multiflora	Rmu_co8340199.1_g000001 Rmu_sc0000469.1_g000006 Rmu_sc0000469.1_g000033 Rmu_sc0000469.1_g000034 Rmu_sc0001659.1_g000036 Rmu_sc0005546.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141780 Rroxscaffold_7G00166670
rosa_rugosa	Rorug02G0093300 Rorug06G0107000 Rorug06G0305900
rosa_samantha	Rh1CG139800 Rh2AG140900 Rh2BG146000 Rh2CG147200 Rh2DG146600 Rh6AG217800 Rh6AG217900 Rh6AG218200 Rh6AG419600 Rh6BG221500 Rh6BG221600 Rh6BG425600 Rh6CG432700 Rh6DG418900
rosa_wichuraiana	Rw2G011050 Rw6G019060 Rw6G019070 Rw6G019110 Rw6G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	836
AciI	CCGC	2 cut(s)	325, 848
AclWI	GGATC	6 cut(s)	215, 280, 356, 398, 482, 776
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	2 cut(s)	187, 696
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	9 cut(s)	59, 124, 216, 226, 248, 543, 715, 922, 939
AluI	AGCT	9 cut(s)	59, 124, 216, 226, 248, 543, 715, 922, 939
Alw26I	GTCTC	1 cut(s)	601
AlwI	GGATC	6 cut(s)	215, 280, 356, 398, 482, 776
AoxI	GGCC	1 cut(s)	813
AseI	ATTAAT	1 cut(s)	669
Asp700I	GAANNNNTTC	1 cut(s)	69
AspS9I	GGNCC	3 cut(s)	532, 559, 845
AsuHPI	GGTGA	3 cut(s)	371, 758, 808
AvaII	GGWCC	3 cut(s)	532, 559, 845
AxyI	CCTNAGG	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	553
BbvCI	CCTCAGC	2 cut(s)	444, 528
BccI	CCATC	2 cut(s)	737, 950
BceAI	ACGGC	2 cut(s)	366, 689
BcoDI	GTCTC	1 cut(s)	601
BfmI	CTRYAG	2 cut(s)	60, 243
Bme18I	GGWCC	3 cut(s)	532, 559, 845
BmgT120I	GGNCC	3 cut(s)	532, 559, 845
BmiI	GGNNCC	2 cut(s)	550, 864
BpmI	CTGGAG	1 cut(s)	483
Bpu10I	CCTNAGC	3 cut(s)	444, 528, 867
BpuEI	CTTGAG	1 cut(s)	539
BsaBI	GATNNNNATC	1 cut(s)	780
BsaWI	WCCGGW	1 cut(s)	364
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bse1I	ACTGG	3 cut(s)	466, 613, 785
Bse21I	CCTNAGG	1 cut(s)	536
Bse8I	GATNNNNATC	1 cut(s)	780
BseGI	GGATG	1 cut(s)	972
BseJI	GATNNNNATC	1 cut(s)	780
BseMII	CTCAG	6 cut(s)	35, 240, 435, 519, 527, 752
BseNI	ACTGG	3 cut(s)	466, 613, 785
BshFI	GGCC	1 cut(s)	815
BsiSI	CCGG	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	601
BsnI	GGCC	1 cut(s)	815
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	8 cut(s)	40, 207, 285, 361, 403, 422, 487, 781
BspACI	CCGC	2 cut(s)	325, 848
BspANI	GGCC	1 cut(s)	815
BspCNI	CTCAG	6 cut(s)	34, 241, 436, 520, 528, 753
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	550, 864
BspPI	GGATC	6 cut(s)	215, 280, 356, 398, 482, 776
BsrI	ACTGG	3 cut(s)	466, 613, 785
BssMI	GATC	8 cut(s)	40, 207, 285, 361, 403, 422, 487, 781
Bst4CI	ACNGT	2 cut(s)	81, 185
Bst6I	CTCTTC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	630
BstDEI	CTNAG	9 cut(s)	21, 249, 419, 444, 528, 536, 761, 806, 867
BstF5I	GGATG	1 cut(s)	972
BstKTI	GATC	8 cut(s)	43, 210, 288, 364, 406, 425, 490, 784
BstMAI	GTCTC	1 cut(s)	601
BstMBI	GATC	8 cut(s)	40, 207, 285, 361, 403, 422, 487, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	681
BstNSI	RCATGY	1 cut(s)	632
BstSFI	CTRYAG	2 cut(s)	60, 243
Bsu36I	CCTNAGG	1 cut(s)	536
BsuRI	GGCC	1 cut(s)	815
BtsCI	GGATG	1 cut(s)	972
BtsIMutI	CAGTG	3 cut(s)	595, 792, 920
Cac8I	GCNNGC	1 cut(s)	630
CciI	TCATGA	1 cut(s)	210
Cfr13I	GGNCC	3 cut(s)	532, 559, 845
Csp6I	GTAC	2 cut(s)	186, 695
CviAII	CATG	5 cut(s)	211, 257, 629, 640, 903
CviQI	GTAC	2 cut(s)	186, 695
DdeI	CTNAG	9 cut(s)	21, 249, 419, 444, 528, 536, 761, 806, 867
DpnI	GATC	8 cut(s)	42, 209, 287, 363, 405, 424, 489, 783
DpnII	GATC	8 cut(s)	40, 207, 285, 361, 403, 422, 487, 781
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	553
Eco47I	GGWCC	3 cut(s)	532, 559, 845
Eco57I	CTGAAG	1 cut(s)	210
Eco81I	CCTNAGG	1 cut(s)	536
EcoO109I	RGGNCCY	2 cut(s)	532, 559
EcoT38I	GRGCYC	1 cut(s)	553
FaeI	CATG	5 cut(s)	214, 260, 632, 643, 906
FatI	CATG	5 cut(s)	210, 256, 628, 639, 902
FauNDI	CATATG	1 cut(s)	7
FokI	GGATG	1 cut(s)	959
FriOI	GRGCYC	1 cut(s)	553
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	815
HapII	CCGG	1 cut(s)	365
Hin1II	CATG	5 cut(s)	214, 260, 632, 643, 906
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	3 cut(s)	309, 427, 511
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	3 cut(s)	371, 758, 808
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	582, 862
Hpy188III	TCNNGA	9 cut(s)	44, 211, 316, 350, 392, 434, 476, 518, 535
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	3 cut(s)	317, 435, 519
HpyAV	CCTTC	6 cut(s)	157, 637, 745, 805, 867, 902
HpyCH4III	ACNGT	2 cut(s)	81, 185
HpyCH4IV	ACGT	1 cut(s)	584
HpyCH4V	TGCA	3 cut(s)	628, 684, 969
HpyF10VI	GCNNNNNNNGC	1 cut(s)	681
HpyF3I	CTNAG	9 cut(s)	21, 249, 419, 444, 528, 536, 761, 806, 867
HpySE526I	ACGT	1 cut(s)	584
Hsp92II	CATG	5 cut(s)	214, 260, 632, 643, 906
Kzo9I	GATC	8 cut(s)	40, 207, 285, 361, 403, 422, 487, 781
LmnI	GCTCC	3 cut(s)	540, 548, 949
LpnPI	CCDG	9 cut(s)	8, 378, 447, 548, 626, 689, 705, 798, 829
MaeII	ACGT	1 cut(s)	584
MalI	GATC	8 cut(s)	42, 209, 287, 363, 405, 424, 489, 783
MboI	GATC	8 cut(s)	40, 207, 285, 361, 403, 422, 487, 781
MboII	GAAGA	2 cut(s)	62, 887
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	4 cut(s)	126, 648, 670, 831
MlyI	GAGTC	3 cut(s)	318, 436, 520
MmeI	TCCRAC	3 cut(s)	7, 181, 823
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	669
MslI	CAYNNNNRTG	2 cut(s)	627, 954
MspI	CCGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	681
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	8 cut(s)	40, 207, 285, 361, 403, 422, 487, 781
NlaIII	CATG	5 cut(s)	214, 260, 632, 643, 906
NlaIV	GGNNCC	2 cut(s)	550, 864
NspI	RCATGY	1 cut(s)	632
PaeI	GCATGC	1 cut(s)	632
PagI	TCATGA	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	69
PleI	GAGTC	3 cut(s)	317, 435, 519
PpsI	GAGTC	3 cut(s)	317, 435, 519
PpuMI	RGGWCCY	2 cut(s)	532, 559
PshBI	ATTAAT	1 cut(s)	669
PsiI	TTATAA	1 cut(s)	836
Psp5II	RGGWCCY	2 cut(s)	532, 559
PspN4I	GGNNCC	2 cut(s)	550, 864
PspPI	GGNCC	3 cut(s)	532, 559, 845
PspPPI	RGGWCCY	2 cut(s)	532, 559
RsaI	GTAC	2 cut(s)	187, 696
RsaNI	GTAC	2 cut(s)	186, 695
RseI	CAYNNNNRTG	2 cut(s)	627, 954
SaqAI	TTAA	1 cut(s)	669
Sau3AI	GATC	8 cut(s)	40, 207, 285, 361, 403, 422, 487, 781
Sau96I	GGNCC	3 cut(s)	532, 559, 845
SchI	GAGTC	3 cut(s)	318, 436, 520
SduI	GDGCHC	1 cut(s)	553
SfcI	CTRYAG	2 cut(s)	60, 243
SinI	GGWCC	3 cut(s)	532, 559, 845
SmiMI	CAYNNNNRTG	2 cut(s)	627, 954
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
SphI	GCATGC	1 cut(s)	632
Sse9I	AATT	4 cut(s)	126, 648, 670, 831
SsiI	CCGC	2 cut(s)	325, 848
SspI	AATATT	2 cut(s)	667, 877
TaaI	ACNGT	2 cut(s)	81, 185
TaiI	ACGT	1 cut(s)	587
TaqI	TCGA	9 cut(s)	39, 307, 315, 349, 425, 433, 475, 509, 517
TasI	AATT	4 cut(s)	126, 648, 670, 831
TatI	WGTACW	1 cut(s)	694
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TscAI	CASTG	3 cut(s)	595, 792, 920
TspDTI	ATGAA	2 cut(s)	209, 656
TspGWI	ACGGA	4 cut(s)	220, 278, 396, 480
TspRI	CASTG	3 cut(s)	595, 792, 920
VpaK11BI	GGWCC	3 cut(s)	532, 559, 845
VspI	ATTAAT	1 cut(s)	669
XceI	RCATGY	1 cut(s)	632
XmnI	GAANNNNTTC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.