Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Forward (+)

5554197 .. 5555789

Gene Structure 1593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGACTAATATAGGAAAATGCATGCAGGGATATCTCGACGAACAATTCATGGAGTTAGAAGAGCTCCAAGATGATGCAAACCCTAATTTTGTTGAAGAAGTTTCCGCATTATACTTCAAAGATTCAGCTCGGTTAATCAATAACATTGACCAAGCTTTGGAAAGAGGATCATTTGATTTCAATCGGCTGGATAGTTACATGCATCAGTTTAAGGGAAGCAGCACGAGCATTGGGGCAAGTAAAGTGAAAGCTGAATGCACTACGTTTAGGGAATACTGCAGAGCTGGAAATGCGGAAGGATGCTTGAGGACTTTCCAGCAACTGAAGAAAGAACACTCAACGTTGAGAAAGAAGCTTGAACATTATTTCCAGGCGAGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

127

Amino Acids

14.67

Weight (kDa)

5.62

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	41 - 122	6.5e-13	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	157
AciI	CCGC	2 cut(s)	105, 293
AclI	AACGTT	1 cut(s)	341
AclWI	GGATC	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	4 cut(s)	95, 118, 181, 359
AjnI	CCWGG	1 cut(s)	369
AloI	GAACNNNNNNTCC	2 cut(s)	351, 383
AluBI	AGCT	6 cut(s)	64, 128, 155, 251, 284, 355
AluI	AGCT	6 cut(s)	64, 128, 155, 251, 284, 355
Alw21I	GWGCWC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	175
AlwNI	CAGNNNCTG	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	371
BfmI	CTRYAG	1 cut(s)	277
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	3 cut(s)	64, 211, 290
BpuEI	CTTGAG	1 cut(s)	325
BsaBI	GATNNNNATC	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	371
BseGI	GGATG	1 cut(s)	305
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	167
BspACI	CCGC	2 cut(s)	105, 293
BspMAI	CTGCAG	1 cut(s)	281
BspPI	GGATC	1 cut(s)	175
BspQI	GCTCTTC	1 cut(s)	54
BssMI	GATC	1 cut(s)	167
BssSI	CACGAG	1 cut(s)	223
Bst2BI	CACGAG	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	371
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	23, 376
BstF5I	GGATG	1 cut(s)	305
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 290
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	2 cut(s)	25, 202
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	23, 376
CaiI	CAGNNNCTG	1 cut(s)	322
CviAII	CATG	3 cut(s)	22, 49, 199
CviJI	RGCY	8 cut(s)	64, 128, 155, 187, 251, 284, 355, 378
CviKI_1	RGCY	8 cut(s)	64, 128, 155, 187, 251, 284, 355, 378
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	369
EcoRV	GATATC	1 cut(s)	32
EcoT22I	ATGCAT	2 cut(s)	23, 204
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	3 cut(s)	25, 52, 202
FaiI	YATR	5 cut(s)	11, 23, 50, 112, 200
FatI	CATG	3 cut(s)	21, 48, 198
Fnu4HI	GCNGC	1 cut(s)	220
FokI	GGATG	1 cut(s)	312
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	220
GluI	GCNGC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	25, 52, 202
HindIII	AAGCTT	2 cut(s)	153, 353
HinfI	GANTC	1 cut(s)	122
Hpy188III	TCNNGA	1 cut(s)	35
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	290
HpyCH4IV	ACGT	2 cut(s)	263, 341
HpyCH4V	TGCA	6 cut(s)	21, 25, 77, 202, 258, 279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 290
HpySE526I	ACGT	2 cut(s)	263, 341
Hsp92II	CATG	3 cut(s)	25, 52, 202
Kzo9I	GATC	1 cut(s)	167
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	5 cut(s)	11, 173, 270, 329, 356
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	3 cut(s)	64, 211, 290
MaeII	ACGT	2 cut(s)	263, 341
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	3 cut(s)	71, 107, 337
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	2 cut(s)	44, 85
MnlI	CCTC	2 cut(s)	158, 300
Mph1103I	ATGCAT	2 cut(s)	23, 204
MseI	TTAA	2 cut(s)	134, 210
MspR9I	CCNGG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	225, 290
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	3 cut(s)	25, 52, 202
NsiI	ATGCAT	2 cut(s)	23, 204
NspI	RCATGY	2 cut(s)	25, 202
PaeI	GCATGC	1 cut(s)	25
PciSI	GCTCTTC	1 cut(s)	54
PctI	GAATGC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	66
Psp1406I	AACGTT	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	66
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	134, 210
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	8 cut(s)	66, 130, 157, 253, 266, 286, 344, 357
SfaNI	GCATC	3 cut(s)	64, 211, 290
SfcI	CTRYAG	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
SphI	GCATGC	1 cut(s)	25
Sse9I	AATT	2 cut(s)	44, 85
SsiI	CCGC	2 cut(s)	105, 293
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	369
TaiI	ACGT	2 cut(s)	266, 344
TaqI	TCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	44, 85
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	134, 210
Tru9I	TTAA	2 cut(s)	134, 210
TseI	GCWGC	1 cut(s)	219
TspDTI	ATGAA	1 cut(s)	37
Van91I	CCANNNNNTGG	1 cut(s)	157
XceI	RCATGY	2 cut(s)	25, 202
Zsp2I	ATGCAT	2 cut(s)	23, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.