Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Reverse (-)

18975574 .. 18977109

Gene Structure 1536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1203100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAAAGAAACCAATTGCGTAGGCAGGTTCGTCTCATGAGGCAGTCCCTCTTTGATCAGGGATTTCTGGACGAACAATTTGTTCAGCTGGAGGAGCTGCAAGATGATGCTAACCCTAATTTTGTGGAGGAAGTAGCTACATTGTACTACCGAGATTCATCTAGATCACTCCAAATCCTAGAGCAGGCACTACAGAGGAACCCTCGTGATTTTAATAAGTTGGACAACTATATGCAGCAGTTCAAGGGAAGTAGCTCAAGCATCGGAGCCAAAAAGGTGAAAGCTGACTGCCAACAGTTTAGGGAATATTGTAATGCAGGAAACGCAGAAGGATGCATGAGGACTTTCCAGCGACTGAAGCAAGAACATGCAACACTGAAAAAGAAGCTTGAGGCTTATTTTCAGATGGCAAGGCAAGCTGGGCCAACCGAGACAGCATGTCGACCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

151

Amino Acids

17.61

Weight (kDa)

8.93

Isoelectric Point (pI)

56.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	46 - 127	9.1e-11	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	442
AcuI	CTGAAG	1 cut(s)	377
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	244
AhdI	GACNNNNNGTC	1 cut(s)	438
AluBI	AGCT	7 cut(s)	88, 97, 137, 255, 284, 388, 419
AluI	AGCT	7 cut(s)	88, 97, 137, 255, 284, 388, 419
Alw26I	GTCTC	2 cut(s)	38, 425
AlwNI	CAGNNNCTG	1 cut(s)	355
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	2 cut(s)	97, 235
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	289
BauI	CACGAG	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	84, 247
BccI	CCATC	1 cut(s)	400
BclI	TGATCA	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	38, 425
BfaI	CTAG	2 cut(s)	162, 179
BfmI	CTRYAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	2 cut(s)	98, 236
BlsI	GCNGC	2 cut(s)	99, 237
BmeRI	GACNNNNNGTC	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	200, 268
BmsI	GCATC	3 cut(s)	97, 270, 323
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
BpmI	CTGGAG	1 cut(s)	110
BpuEI	CTTGAG	2 cut(s)	241, 410
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	84, 247
BseYI	CCCAGC	1 cut(s)	419
BshFI	GGCC	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	2 cut(s)	38, 425
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	55, 164
BspANI	GGCC	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	200, 268
BspMI	ACCTGC	1 cut(s)	16
BssMI	GATC	2 cut(s)	55, 164
BssSI	CACGAG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	297
BstC8I	GCNNGC	2 cut(s)	186, 417
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	338
BstKTI	GATC	2 cut(s)	58, 167
BstMAI	GTCTC	2 cut(s)	38, 425
BstMBI	GATC	2 cut(s)	55, 164
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 323, 358, 416, 421
BstNSI	RCATGY	2 cut(s)	371, 441
BstSFI	CTRYAG	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	84, 247
BsuRI	GGCC	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	374
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	186, 417
CaiI	CAGNNNCTG	1 cut(s)	355
CciI	TCATGA	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	4 cut(s)	37, 337, 368, 438
CviQI	GTAC	1 cut(s)	145
DpnI	GATC	2 cut(s)	57, 166
DpnII	GATC	2 cut(s)	55, 164
DriI	GACNNNNNGTC	1 cut(s)	438
Eam1105I	GACNNNNNGTC	1 cut(s)	438
Eco57I	CTGAAG	1 cut(s)	377
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	338
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	4 cut(s)	40, 340, 371, 441
FaiI	YATR	6 cut(s)	38, 231, 233, 338, 369, 439
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	4 cut(s)	36, 336, 367, 437
FbaI	TGATCA	1 cut(s)	55
FblI	GTMKAC	1 cut(s)	442
Fnu4HI	GCNGC	2 cut(s)	98, 236
FokI	GGATG	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	98, 236
FspBI	CTAG	2 cut(s)	162, 179
GluI	GCNGC	2 cut(s)	98, 236
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	424
Hin1II	CATG	4 cut(s)	40, 340, 371, 441
HincII	GTYRAC	1 cut(s)	443
HindII	GTYRAC	1 cut(s)	443
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	2 cut(s)	266, 405
Hpy188III	TCNNGA	4 cut(s)	37, 68, 162, 206
Hpy8I	GTNNAC	1 cut(s)	443
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4V	TGCA	5 cut(s)	100, 235, 317, 336, 371
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 323, 358, 416, 421
Hsp92II	CATG	4 cut(s)	40, 340, 371, 441
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	55, 164
LmnI	GCTCC	2 cut(s)	94, 266
LpnPI	CCDG	8 cut(s)	11, 44, 53, 74, 170, 303, 362, 405
Lsp1109I	GCAGC	2 cut(s)	84, 247
LweI	GCATC	3 cut(s)	97, 270, 323
MaeI	CTAG	2 cut(s)	162, 179
MalI	GATC	2 cut(s)	57, 166
MboI	GATC	2 cut(s)	55, 164
MfeI	CAATTG	1 cut(s)	14
MluCI	AATT	3 cut(s)	14, 77, 118
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	8 cut(s)	33, 59, 85, 121, 189, 213, 333, 385
Mph1103I	ATGCAT	1 cut(s)	338
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	88
MunI	CAATTG	1 cut(s)	14
MwoI	GCNNNNNNNGC	5 cut(s)	94, 323, 358, 416, 421
NdeII	GATC	2 cut(s)	55, 164
NlaIII	CATG	4 cut(s)	40, 340, 371, 441
NlaIV	GGNNCC	2 cut(s)	200, 268
NsiI	ATGCAT	1 cut(s)	338
NspI	RCATGY	2 cut(s)	371, 441
PagI	TCATGA	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	99, 237
PspFI	CCCAGC	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	200, 268
PspPI	GGNCC	1 cut(s)	422
PstNI	CAGNNNCTG	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SalI	GTCGAC	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	98, 236
Sau3AI	GATC	2 cut(s)	55, 164
Sau96I	GGNCC	1 cut(s)	422
SetI	ASST	9 cut(s)	30, 90, 99, 139, 257, 279, 286, 390, 421
SfaNI	GCATC	3 cut(s)	97, 270, 323
SfcI	CTRYAG	1 cut(s)	191
SmlI	CTYRAG	2 cut(s)	256, 389
SmoI	CTYRAG	2 cut(s)	256, 389
Sse9I	AATT	3 cut(s)	14, 77, 118
SspI	AATATT	1 cut(s)	308
SspMI	CTAG	2 cut(s)	162, 179
TaaI	ACNGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	442
TasI	AATT	3 cut(s)	14, 77, 118
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	381
TseI	GCWGC	2 cut(s)	97, 235
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	381
XagI	CCTNNNNNAGG	1 cut(s)	182
XbaI	TCTAGA	1 cut(s)	161
XceI	RCATGY	2 cut(s)	371, 441
XmiI	GTMKAC	1 cut(s)	442
XspI	CTAG	2 cut(s)	162, 179
Zsp2I	ATGCAT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.