Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002490.1

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Forward (+)

45351 .. 48411

Gene Structure 3061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002490.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggaaagaaacaatattcgtaggcaggttgctctgatgaggcagtccctctttactcagggatatctggatgaacagtttgttcagttggaggagctgcaagatgatactaatccaaattttgtggaggaaattgctacattgtactaccgtgattcatgcagatcactccaaaccatagagaagtcattagagaaaacccctcacgatttcaataagttggacaatcatatgcatcaattcaagggaagtagctcaagcatcggagccaagaaggtgaaagctgaatgccaacagttcagagaatattgtagggcaggaaatggagaaggaatttctatggatcaagtatcagtgaatgatgtgaaaactcatgttgagaaaccagaaaaattcaagggtgtggactttaaacgctggcaacaaaaaatgttgttttatctaacaacattgaaccttgctcatgtcgtgaaggaagaagttccaaaggcagaaggagatgatgtgactgcagaacaattgaatgcaattgatgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

179

Amino Acids

20.72

Weight (kDa)

5.59

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AclWI	GGATC	1 cut(s)	351
AcsI	RAATTY	3 cut(s)	118, 333, 392
AfaI	GTAC	1 cut(s)	146
AgsI	TTSAA	5 cut(s)	214, 244, 397, 454, 523
AluBI	AGCT	3 cut(s)	97, 255, 284
AluI	AGCT	3 cut(s)	97, 255, 284
AlwI	GGATC	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	3 cut(s)	118, 333, 392
Asp700I	GAANNNNTTC	1 cut(s)	480
AsuHPI	GGTGA	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	510
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	3 cut(s)	244, 270, 523
BpuEI	CTTGAG	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	489, 519
Bse8I	GATNNNNATC	1 cut(s)	111
BseGI	GGATG	1 cut(s)	76
BseJI	GATNNNNATC	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	2 cut(s)	293, 529
Bsp143I	GATC	2 cut(s)	164, 343
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	268
BspMAI	CTGCAG	1 cut(s)	514
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	351
BssMI	GATC	2 cut(s)	164, 343
Bst4CI	ACNGT	3 cut(s)	78, 152, 297
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	2 cut(s)	167, 346
BstMBI	GATC	2 cut(s)	164, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	533
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	360
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	419
Csp6I	GTAC	1 cut(s)	145
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	3 cut(s)	159, 374, 464
CviJI	RGCY	4 cut(s)	97, 255, 269, 284
CviKI_1	RGCY	4 cut(s)	97, 255, 269, 284
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	166, 345
DpnII	GATC	2 cut(s)	164, 343
DraI	TTTAAA	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	65
EcoRV	GATATC	1 cut(s)	65
EcoT22I	ATGCAT	1 cut(s)	237
FaeI	CATG	3 cut(s)	162, 377, 467
FaiI	YATR	7 cut(s)	160, 179, 231, 233, 341, 375, 465
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	3 cut(s)	158, 373, 463
FauNDI	CATATG	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	98
Hin1II	CATG	3 cut(s)	162, 377, 467
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	3 cut(s)	36, 266, 302
Hpy188III	TCNNGA	3 cut(s)	68, 206, 469
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	4 cut(s)	268, 323, 466, 488
HpyCH4III	ACNGT	3 cut(s)	78, 152, 297
HpyCH4V	TGCA	5 cut(s)	100, 162, 235, 512, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	533
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	162, 377, 467
Kzo9I	GATC	2 cut(s)	164, 343
LmnI	GCTCC	2 cut(s)	94, 266
LpnPI	CCDG	6 cut(s)	11, 44, 53, 303, 399, 403
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	3 cut(s)	244, 270, 523
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	2 cut(s)	166, 345
MboI	GATC	2 cut(s)	164, 343
MboII	GAAGA	1 cut(s)	488
MfeI	CAATTG	2 cut(s)	518, 528
MluCI	AATT	7 cut(s)	118, 132, 239, 333, 392, 518, 528
MmeI	TCCRAC	2 cut(s)	69, 201
MnlI	CCTC	5 cut(s)	33, 59, 85, 121, 213
Mph1103I	ATGCAT	1 cut(s)	237
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	1 cut(s)	411
MunI	CAATTG	2 cut(s)	518, 528
Mva1269I	GAATGC	2 cut(s)	293, 529
MwoI	GCNNNNNNNGC	1 cut(s)	533
NdeI	CATATG	1 cut(s)	231
NdeII	GATC	2 cut(s)	164, 343
NlaIII	CATG	3 cut(s)	162, 377, 467
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	505
NsiI	ATGCAT	1 cut(s)	237
PctI	GAATGC	2 cut(s)	293, 529
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	514
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	2 cut(s)	164, 343
SetI	ASST	6 cut(s)	30, 99, 257, 279, 286, 459
SfaNI	GCATC	3 cut(s)	244, 270, 523
SfcI	CTRYAG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	7 cut(s)	118, 132, 239, 333, 392, 518, 528
SspI	AATATT	2 cut(s)	16, 308
TaaI	ACNGT	3 cut(s)	78, 152, 297
TasI	AATT	7 cut(s)	118, 132, 239, 333, 392, 518, 528
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	2 cut(s)	87, 147
TspRI	CASTG	1 cut(s)	360
XapI	RAATTY	3 cut(s)	118, 333, 392
XmnI	GAANNNNTTC	1 cut(s)	480
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.