Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Reverse (-)

6287020 .. 6289085

Gene Structure 2066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1090700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGACAGAAACCAACTGCAGCGCCAGGTTGCCCTCAAGAGAAGCTTTCTATTTGAGCAGAGTTACCTCGATCCTCAGCAATTCGTTCAGCTGGAGGAATTGCAAGACGATGCAAATCCAAATTTTGTGGAGGAAATTGTGACTTTGTTCTACAAAGATTCAGCTAGACTGTTTCAAAAGATTGAGCAAGCACTGTACAGTAGGCCTATAGATTTTGCCAAGCTGGATGATTACATGCACCAGTTCAGGGGTAGTAGTTCAAGCATTGGAGCTATAAAAGTGAAGAATGAATGCTCCCAGTTTAAAGAATTTTGTTTGGCTGCTAATGCTGATGGATGCGTCAGGGCCTTGGAGAGAGTGAAACAAGAACACCAGACCTTGAGGATTCACCTTGAAAATTATTTTCAGTTGAGAAGGCAAGCAGGACTAGTACAGCGTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035556 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

148

Amino Acids

17.32

Weight (kDa)

6.83

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 128	6.7e-11	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	65
AcsI	RAATTY	2 cut(s)	121, 308
AfaI	GTAC	2 cut(s)	197, 432
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	3 cut(s)	176, 261, 395
AhlI	ACTAGT	1 cut(s)	427
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	5 cut(s)	45, 91, 164, 223, 272
AluI	AGCT	5 cut(s)	45, 91, 164, 223, 272
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	2 cut(s)	203, 345
ApeKI	GCWGC	2 cut(s)	19, 320
ApoI	RAATTY	2 cut(s)	121, 308
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	345
AsuHPI	GGTGA	1 cut(s)	380
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	31, 307
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	26
BcuI	ACTAGT	1 cut(s)	427
BfaI	CTAG	3 cut(s)	165, 428, 442
BfmI	CTRYAG	2 cut(s)	17, 207
BfoI	RGCGCY	1 cut(s)	25
BisI	GCNGC	2 cut(s)	20, 321
BlsI	GCNGC	2 cut(s)	21, 322
Bme1390I	CCNGG	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	26
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	100, 326
BmuI	ACTGGG	1 cut(s)	292
BpmI	CTGGAG	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	20, 400
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	2 cut(s)	241, 298
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	2 cut(s)	232, 341
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	2 cut(s)	241, 298
BseXI	GCAGC	2 cut(s)	31, 307
BshFI	GGCC	2 cut(s)	205, 347
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	205, 347
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	205, 347
BspCNI	CTCAG	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	21
BspPI	GGATC	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	241, 298
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	3 cut(s)	171, 195, 200
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	189, 420
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	232, 341
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	2 cut(s)	17, 207
BstV1I	GCAGC	2 cut(s)	31, 307
BsuRI	GGCC	2 cut(s)	205, 347
BtsCI	GGATG	2 cut(s)	232, 341
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	189, 420
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	345
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	196, 431
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	8 cut(s)	45, 91, 164, 205, 223, 272, 320, 347
CviKI_1	RGCY	8 cut(s)	45, 91, 164, 205, 223, 272, 320, 347
CviQI	GTAC	2 cut(s)	196, 431
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
DraI	TTTAAA	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	348
Eco147I	AGGCCT	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	1 cut(s)	238
FaiI	YATR	3 cut(s)	209, 236, 275
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	20, 321
FokI	GGATG	2 cut(s)	239, 348
Fsp4HI	GCNGC	2 cut(s)	20, 321
FspBI	CTAG	3 cut(s)	165, 428, 442
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	2 cut(s)	20, 321
GsuI	CTGGAG	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	2 cut(s)	205, 347
HgaI	GACGC	1 cut(s)	328
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	238
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	2 cut(s)	158, 385
HphI	GGTGA	1 cut(s)	380
Hpy188III	TCNNGA	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	408
HpyCH4III	ACNGT	3 cut(s)	171, 195, 200
HpyCH4V	TGCA	4 cut(s)	19, 103, 113, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	238
HspAI	GCGC	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	2 cut(s)	269, 299
Lsp1109I	GCAGC	2 cut(s)	31, 307
LweI	GCATC	2 cut(s)	100, 326
MaeI	CTAG	3 cut(s)	165, 428, 442
MaeIII	GTNAC	2 cut(s)	62, 139
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	295
MluCI	AATT	6 cut(s)	80, 98, 121, 135, 308, 397
MnlI	CCTC	6 cut(s)	44, 77, 84, 88, 124, 375
MseI	TTAA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	238
PceI	AGGCCT	1 cut(s)	205
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	158, 385
PkrI	GCNGC	2 cut(s)	21, 322
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	345
PstI	CTGCAG	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	2 cut(s)	197, 432
RsaNI	GTAC	2 cut(s)	196, 431
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	2 cut(s)	20, 321
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	345
ScrFI	CCNGG	1 cut(s)	26
SetI	ASST	9 cut(s)	30, 47, 69, 93, 166, 225, 274, 380, 393
SfaNI	GCATC	2 cut(s)	100, 326
SfcI	CTRYAG	2 cut(s)	17, 207
SmlI	CTYRAG	2 cut(s)	35, 379
SmoI	CTYRAG	2 cut(s)	35, 379
SpeI	ACTAGT	1 cut(s)	427
Sse9I	AATT	6 cut(s)	80, 98, 121, 135, 308, 397
SseBI	AGGCCT	1 cut(s)	205
SspMI	CTAG	3 cut(s)	165, 428, 442
StuI	AGGCCT	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	171, 195, 200
TaqI	TCGA	1 cut(s)	69
TasI	AATT	6 cut(s)	80, 98, 121, 135, 308, 397
TatI	WGTACW	2 cut(s)	195, 430
TfiI	GAWTC	2 cut(s)	158, 385
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	19, 320
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	198
XapI	RAATTY	2 cut(s)	121, 308
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	3 cut(s)	165, 428, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.