Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Reverse (-)

5304213 .. 5305855

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g08460.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGACAGAAACCAACTGCAGCGCCAGGTTGCCCTCAAGAGAAGCTTTCTCTTTGAGCAGTGTTACCTCGATCCTCAGCAATTCGTTCAGCTGGAGGAATTGCAAGACGATGCAAATCCAAATTTTGTGGAGGAAATTGTGACTTTGTTCTACAAAGATTCAGCTAGACTGTTTCAAAAGATTGAGCAAGCACTGTACAGTAGGCCTATAGATTTTGCCAAGCTGGATGATTACATGCACCAGTTCAAGGGTAGTACTTCAAGCATTGGAGCTATAAAAGTGAAGAATGAATGCTCCCAGTTCAAAGAATTTTGTTTGGCTGCTAATGCTGATGGGGCTTTGGAGAGAGTGAAACAAGAACACCAGACCTTGAGGATTCACCTTGAAAATTATTTTCAGGTATTACTCTCTCTAGTTGTGTGCCTAGGGCAAGTAAAAACTTTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035556 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

150

Amino Acids

17.4

Weight (kDa)

5.62

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	65
AcsI	RAATTY	2 cut(s)	121, 308
AfaI	GTAC	2 cut(s)	197, 256
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	5 cut(s)	176, 247, 261, 304, 386
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	5 cut(s)	45, 91, 164, 223, 272
AluI	AGCT	5 cut(s)	45, 91, 164, 223, 272
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	2 cut(s)	19, 320
ApoI	RAATTY	2 cut(s)	121, 308
AspA2I	CCTAGG	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	371
AvrII	CCTAGG	1 cut(s)	424
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	31, 307
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	26
BfaI	CTAG	3 cut(s)	165, 413, 425
BfmI	CTRYAG	2 cut(s)	17, 207
BfoI	RGCGCY	1 cut(s)	25
BisI	GCNGC	2 cut(s)	20, 321
BlnI	CCTAGG	1 cut(s)	424
BlsI	GCNGC	2 cut(s)	21, 322
BmcAI	AGTACT	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	26
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	1 cut(s)	100
BmuI	ACTGGG	1 cut(s)	292
BpmI	CTGGAG	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	20, 391
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	2 cut(s)	241, 298
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	2 cut(s)	241, 298
BseXI	GCAGC	2 cut(s)	31, 307
BshFI	GGCC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	205
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	21
BspPI	GGATC	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	241, 298
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	424
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	3 cut(s)	171, 195, 200
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 335
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	2 cut(s)	17, 207
BstV1I	GCAGC	2 cut(s)	31, 307
BsuRI	GGCC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	65, 191
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	196, 255
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	8 cut(s)	45, 91, 164, 205, 223, 272, 320, 338
CviKI_1	RGCY	8 cut(s)	45, 91, 164, 205, 223, 272, 320, 338
CviQI	GTAC	2 cut(s)	196, 255
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	424
Eco147I	AGGCCT	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	1 cut(s)	238
FaiI	YATR	3 cut(s)	209, 236, 275
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	20, 321
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	20, 321
FspBI	CTAG	3 cut(s)	165, 413, 425
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	2 cut(s)	20, 321
GsuI	CTGGAG	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	238
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	2 cut(s)	158, 376
HphI	GGTGA	1 cut(s)	371
Hpy188III	TCNNGA	1 cut(s)	37
HpyCH4III	ACNGT	3 cut(s)	171, 195, 200
HpyCH4V	TGCA	4 cut(s)	19, 103, 113, 238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 335
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	238
HspAI	GCGC	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	2 cut(s)	269, 299
LpnPI	CCDG	8 cut(s)	11, 38, 77, 209, 254, 311, 377, 383
Lsp1109I	GCAGC	2 cut(s)	31, 307
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	3 cut(s)	165, 413, 425
MaeIII	GTNAC	2 cut(s)	62, 139
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	295
MluCI	AATT	6 cut(s)	80, 98, 121, 135, 308, 388
MnlI	CCTC	6 cut(s)	44, 77, 84, 88, 124, 366
MspA1I	CMGCKG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	326, 335
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	238
PceI	AGGCCT	1 cut(s)	205
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	158, 376
PkrI	GCNGC	2 cut(s)	21, 322
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	2 cut(s)	197, 256
RsaNI	GTAC	2 cut(s)	196, 255
SatI	GCNGC	2 cut(s)	20, 321
Sau3AI	GATC	1 cut(s)	70
ScaI	AGTACT	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	26
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	2 cut(s)	17, 207
SmlI	CTYRAG	2 cut(s)	35, 370
SmoI	CTYRAG	2 cut(s)	35, 370
Sse9I	AATT	6 cut(s)	80, 98, 121, 135, 308, 388
SseBI	AGGCCT	1 cut(s)	205
SspMI	CTAG	3 cut(s)	165, 413, 425
StuI	AGGCCT	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	3 cut(s)	171, 195, 200
TaqI	TCGA	1 cut(s)	69
TasI	AATT	6 cut(s)	80, 98, 121, 135, 308, 388
TatI	WGTACW	2 cut(s)	195, 254
TfiI	GAWTC	2 cut(s)	158, 376
TscAI	CASTG	2 cut(s)	65, 198
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	19, 320
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	303
TspRI	CASTG	2 cut(s)	65, 198
XapI	RAATTY	2 cut(s)	121, 308
XceI	RCATGY	1 cut(s)	238
XmaJI	CCTAGG	1 cut(s)	424
XspI	CTAG	3 cut(s)	165, 413, 425
ZrmI	AGTACT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.