Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Reverse (-)

4322741 .. 4324653

Gene Structure 1913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00161600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGACAGAAACCAGTTGCGACGCCAGGTTGCCCACATGAGAAGTTCTCTCATTGAGCAGCATTACTTGGATCAGCAGCAATTTGTCCAGCTGGAGGATTTGGAAGACGATAGTAACCCAAACTTTGTGGAGGAAATCGTGACATTGTTCTACAAAGACTCGTCTAGACTCTTCCAAAAGATTGATCAAGCACTGCATAGTGTACCTATGGATTTTGCCAGGCTGGATGATTACGTGCACCAGTTCAAGGGTAGTAGCTCAAGCATTGGAGCTATAAAGGTGAAGAATGAATGCACACAATTCAAAGAATTTTGTCTGGCAGGAAATGCTGAAGGATGCCTCAGGGCTTTCCAGAGAGTGAAACATGAGCATGAGGCATTGAAAAGGCAGCTTGAAACTTATTTCCAGTTGAGAAGACAAGCTGGAATGGCACAAAGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035556 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

147

Amino Acids

17.29

Weight (kDa)

6.59

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 129	1.7e-11	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	351
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	94, 247
AgsI	TTSAA	4 cut(s)	247, 304, 382, 395
AjnI	CCWGG	2 cut(s)	24, 218
AluBI	AGCT	5 cut(s)	91, 258, 272, 391, 422
AluI	AGCT	5 cut(s)	91, 258, 272, 391, 422
Alw21I	GWGCWC	1 cut(s)	240
Alw44I	GTGCAC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	78
ApaLI	GTGCAC	1 cut(s)	236
ApeKI	GCWGC	3 cut(s)	58, 76, 388
ApoI	RAATTY	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	292
AxyI	CCTNAGG	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	240
BbsI	GAAGAC	2 cut(s)	111, 421
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	70, 88, 400
BciT130I	CCWGG	2 cut(s)	26, 220
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	1 cut(s)	165
BisI	GCNGC	3 cut(s)	59, 77, 389
BlsI	GCNGC	3 cut(s)	60, 78, 390
Bme1390I	CCNGG	2 cut(s)	26, 220
BmrFI	CCNGG	2 cut(s)	26, 220
BmsI	GCATC	1 cut(s)	326
BpiI	GAAGAC	2 cut(s)	111, 421
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
BpmI	CTGGAG	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 247
Bse1I	ACTGG	3 cut(s)	13, 241, 406
Bse21I	CCTNAGG	1 cut(s)	341
BseBI	CCWGG	2 cut(s)	26, 220
BseGI	GGATG	2 cut(s)	232, 341
BseLI	CCNNNNNNNGG	2 cut(s)	94, 247
BseMII	CTCAG	1 cut(s)	355
BseNI	ACTGG	3 cut(s)	13, 241, 406
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	3 cut(s)	70, 88, 400
BsiHKAI	GWGCWC	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	94, 247
BsmI	GAATGC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	70, 184
BspCNI	CTCAG	1 cut(s)	354
BspPI	GGATC	1 cut(s)	78
BsrI	ACTGG	3 cut(s)	13, 241, 406
BssMI	GATC	2 cut(s)	70, 184
BssNI	GRCGYC	1 cut(s)	22
Bst2UI	CCWGG	2 cut(s)	26, 220
Bst6I	CTCTTC	1 cut(s)	176
BstACI	GRCGYC	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstBAI	YACGTR	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	232, 341
BstKTI	GATC	2 cut(s)	73, 187
BstMBI	GATC	2 cut(s)	70, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 428
BstNI	CCWGG	2 cut(s)	26, 220
BstSCI	CCNGG	2 cut(s)	24, 218
BstSLI	GKGCMC	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	70, 88, 400
BstV2I	GAAGAC	2 cut(s)	111, 421
Bsu36I	CCTNAGG	1 cut(s)	341
BtsCI	GGATG	2 cut(s)	232, 341
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	1 cut(s)	191
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	203
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	3 cut(s)	37, 365, 371
CviJI	RGCY	7 cut(s)	91, 223, 258, 272, 347, 391, 422
CviKI_1	RGCY	7 cut(s)	91, 223, 258, 272, 347, 391, 422
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	2 cut(s)	72, 186
DpnII	GATC	2 cut(s)	70, 184
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	351
Eco81I	CCTNAGG	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	24, 218
FaeI	CATG	3 cut(s)	40, 368, 374
FaiI	YATR	6 cut(s)	38, 198, 209, 275, 366, 372
FatI	CATG	3 cut(s)	36, 364, 370
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	59, 77, 389
FokI	GGATG	2 cut(s)	239, 348
Fsp4HI	GCNGC	3 cut(s)	59, 77, 389
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	3 cut(s)	59, 77, 389
GsuI	CTGGAG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	3 cut(s)	40, 368, 374
HinfI	GANTC	2 cut(s)	158, 168
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	2 cut(s)	203, 238
Hpy188III	TCNNGA	4 cut(s)	139, 165, 352, 441
Hpy8I	GTNNAC	2 cut(s)	203, 238
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	3 cut(s)	196, 238, 294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 428
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	3 cut(s)	40, 368, 374
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	70, 184
LmnI	GCTCC	1 cut(s)	269
Lsp1109I	GCAGC	3 cut(s)	70, 88, 400
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	2 cut(s)	113, 139
MalI	GATC	2 cut(s)	72, 186
MboI	GATC	2 cut(s)	70, 184
MboII	GAAGA	4 cut(s)	116, 163, 295, 426
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	3 cut(s)	80, 299, 308
MlyI	GAGTC	2 cut(s)	152, 162
MnlI	CCTC	4 cut(s)	88, 124, 350, 367
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	91
MspR9I	CCNGG	2 cut(s)	26, 220
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	2 cut(s)	26, 220
MwoI	GCNNNNNNNGC	2 cut(s)	326, 428
NdeII	GATC	2 cut(s)	70, 184
NlaIII	CATG	3 cut(s)	40, 368, 374
NmuCI	GTSAC	1 cut(s)	139
PctI	GAATGC	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	60, 78, 390
PleI	GAGTC	2 cut(s)	152, 162
PpsI	GAGTC	2 cut(s)	152, 162
Ppu21I	YACGTR	1 cut(s)	235
Psp6I	CCWGG	2 cut(s)	24, 218
PspGI	CCWGG	2 cut(s)	24, 218
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	369
SatI	GCNGC	3 cut(s)	59, 77, 389
Sau3AI	GATC	2 cut(s)	70, 184
SchI	GAGTC	2 cut(s)	152, 162
ScrFI	CCNGG	2 cut(s)	26, 220
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	3 cut(s)	80, 299, 308
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	24, 218
TaiI	ACGT	1 cut(s)	237
TasI	AATT	3 cut(s)	80, 299, 308
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	3 cut(s)	58, 76, 388
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	198
VneI	GTGCAC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	308
XbaI	TCTAGA	1 cut(s)	164
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.