Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Reverse (-)

37693382 .. 37695430

Gene Structure 2049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G445100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGACAGAAACCAATTGCAACGCCAGGTTGCCCTCAAGAGAAGCTCTCTGTTTGAGCAGCAGTTCCTCGATTCACAGCAATTCGTACAGCTGGAGGATTTGGAAGACGATGCTAACCCAAATTTTGTGGAGGAAATTGTGACATTGTTCTACAAAGACTCATCTAGACTGTTCCAAAAGATTGAACAAACCATGCAAAGTAGACCTATTGATTTTGGCAAGCTGGATGATTACATGCACCAGTTCAAGGGTAGCAGCTCAAGCATTGGAGCTATAAAGGTGAAGAATGAATGCTCCCAATTTAAGGAATTTTGTTTGGCAGGAAATGCTGAAGGCTGCTTCTGGGCTTACCAGAGAGTGAAACAAGAGCACCACACCTTGAGGATCCAACTTGAATCTTACTTTCAGTTGAGGAAACAAGCAGGACTGGTACGACGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035556 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

148

Amino Acids

17.4

Weight (kDa)

6.83

Isoelectric Point (pI)

61.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	202
AclWI	GGATC	2 cut(s)	379, 392
AcsI	RAATTY	2 cut(s)	121, 308
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	87, 432
AfiI	CCNNNNNNNGG	2 cut(s)	247, 304
AgsI	TTSAA	3 cut(s)	185, 247, 395
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	5 cut(s)	45, 91, 223, 258, 272
AluI	AGCT	5 cut(s)	45, 91, 223, 258, 272
Alw21I	GWGCWC	1 cut(s)	372
AlwI	GGATC	2 cut(s)	379, 392
ApeKI	GCWGC	3 cut(s)	58, 255, 336
ApoI	RAATTY	2 cut(s)	121, 308
AsuHPI	GGTGA	1 cut(s)	292
BamHI	GGATCC	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	3 cut(s)	70, 267, 323
BciT130I	CCWGG	1 cut(s)	26
BfaI	CTAG	1 cut(s)	165
BisI	GCNGC	3 cut(s)	59, 256, 337
BlsI	GCNGC	3 cut(s)	60, 257, 338
Bme1390I	CCNGG	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
BpmI	CTGGAG	1 cut(s)	113
BpuEI	CTTGAG	3 cut(s)	20, 244, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 304
Bse1I	ACTGG	2 cut(s)	241, 432
BseBI	CCWGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	247, 304
BseNI	ACTGG	2 cut(s)	241, 432
BseXI	GCAGC	3 cut(s)	70, 267, 323
BsiHKAI	GWGCWC	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	247, 304
BsmI	GAATGC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	386
BspPI	GGATC	2 cut(s)	379, 392
BsrI	ACTGG	2 cut(s)	241, 432
BssMI	GATC	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	1 cut(s)	387
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	2 cut(s)	261, 326
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	70, 267, 323
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	86, 431
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	2 cut(s)	193, 235
CviJI	RGCY	7 cut(s)	45, 91, 223, 258, 272, 336, 347
CviKI_1	RGCY	7 cut(s)	45, 91, 223, 258, 272, 336, 347
CviQI	GTAC	2 cut(s)	86, 431
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	196, 238
FaiI	YATR	3 cut(s)	194, 236, 275
FatI	CATG	2 cut(s)	192, 234
FblI	GTMKAC	1 cut(s)	202
Fnu4HI	GCNGC	3 cut(s)	59, 256, 337
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	59, 256, 337
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	3 cut(s)	59, 256, 337
GsuI	CTGGAG	1 cut(s)	113
Hin1II	CATG	2 cut(s)	196, 238
HinfI	GANTC	3 cut(s)	71, 158, 395
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	443
Hpy188III	TCNNGA	2 cut(s)	37, 165
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	1 cut(s)	438
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	3 cut(s)	19, 196, 238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	261, 326
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	2 cut(s)	196, 238
Kzo9I	GATC	1 cut(s)	384
LmnI	GCTCC	2 cut(s)	269, 299
Lsp1109I	GCAGC	3 cut(s)	70, 267, 323
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	2 cut(s)	116, 295
MfeI	CAATTG	1 cut(s)	14
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	6 cut(s)	14, 80, 121, 135, 299, 308
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	6 cut(s)	44, 77, 88, 124, 375, 405
MseI	TTAA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	14
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	261, 326
NdeII	GATC	1 cut(s)	384
NlaIII	CATG	2 cut(s)	196, 238
NlaIV	GGNNCC	1 cut(s)	386
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	238
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	71, 395
PkrI	GCNGC	3 cut(s)	60, 257, 338
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	2 cut(s)	87, 432
RsaNI	GTAC	2 cut(s)	86, 431
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	3 cut(s)	59, 256, 337
Sau3AI	GATC	1 cut(s)	384
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	372
SfaNI	GCATC	1 cut(s)	100
SmlI	CTYRAG	3 cut(s)	35, 259, 379
SmoI	CTYRAG	3 cut(s)	35, 259, 379
Sse9I	AATT	6 cut(s)	14, 80, 121, 135, 299, 308
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	171
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	1 cut(s)	69
TasI	AATT	6 cut(s)	14, 80, 121, 135, 299, 308
TfiI	GAWTC	2 cut(s)	71, 395
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	3 cut(s)	58, 255, 336
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	303
XapI	RAATTY	2 cut(s)	121, 308
XbaI	TCTAGA	1 cut(s)	164
XceI	RCATGY	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	202
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.