Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Reverse (-)

9779829 .. 9781444

Gene Structure 1616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1111300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGACAGAACCCAACTGCAGCGCCAGGTTGCCCTCAAGAGAAGCTCTCTCTTTGAGCAGCGTTACCTCGATCAGCAGCAATTCGTTCAGCTGGAGGAATTGCAAGATGATGCAAACCCAAATTTTGTGGAGGAAATTGTGACATTGTTCTACAAAGACTCAGCTAGACTGTTCCAAAAGATTGAGCAAGCACTGTACAGTAGGCCTATAGATTTTTCCAAGCTGGATGATTACATGCACCAGTTCAACGGTAGTAGTTCAAGCATTGGAGCTATAAAGGTGAAGAATGAATGCTCCCAATTTAAAGAATTTTGTTTGGCTGCAAATGCTGATGGATGCTTCAGGGCTTTGGAGAGAGTGAAACAAGAGCATCAGACCTTGAGGATTCACCTTGAGAATTATTTTCAGGTATCATTACCCTCTCTAGTCTTGTGCCTGGAGCGAGAAGAAAACCTTTCATGTACAAGGGATATATCGTTTCGAACTTTTTTTTTTCCTCCCTTATCATCTCAAGTGAAAGTGAGAAAGAGAGAGCAGGGATATATATATCCTCGGGATAGAGAAGTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035556 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

191

Amino Acids

22.51

Weight (kDa)

6.83

Isoelectric Point (pI)

55.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 128	4.1e-10	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	121, 308
AcuI	CTGAAG	1 cut(s)	325
AfaI	GTAC	2 cut(s)	197, 463
AgsI	TTSAA	2 cut(s)	247, 261
AjnI	CCWGG	2 cut(s)	24, 435
AluBI	AGCT	5 cut(s)	45, 91, 164, 223, 272
AluI	AGCT	5 cut(s)	45, 91, 164, 223, 272
Ama87I	CYCGRG	1 cut(s)	552
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	4 cut(s)	19, 58, 76, 320
ApoI	RAATTY	2 cut(s)	121, 308
AspLEI	GCGC	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	292, 380
AsuII	TTCGAA	1 cut(s)	481
AvaI	CYCGRG	1 cut(s)	552
BbvI	GCAGC	4 cut(s)	31, 70, 88, 307
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	2 cut(s)	26, 437
BfaI	CTAG	2 cut(s)	165, 425
BfmI	CTRYAG	2 cut(s)	17, 207
BfoI	RGCGCY	1 cut(s)	25
BisI	GCNGC	4 cut(s)	20, 59, 77, 321
BlsI	GCNGC	4 cut(s)	21, 60, 78, 322
Bme1390I	CCNGG	2 cut(s)	26, 437
BmeT110I	CYCGRG	1 cut(s)	552
BmrFI	CCNGG	2 cut(s)	26, 437
BmsI	GCATC	3 cut(s)	100, 326, 379
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
BpmI	CTGGAG	2 cut(s)	113, 458
Bpu14I	TTCGAA	1 cut(s)	481
BpuEI	CTTGAG	4 cut(s)	20, 400, 413, 495
BsaJI	CCNNGG	1 cut(s)	551
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	2 cut(s)	26, 437
BseDI	CCNNGG	1 cut(s)	551
BseGI	GGATG	2 cut(s)	232, 341
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	241
BseXI	GCAGC	4 cut(s)	31, 70, 88, 307
BshFI	GGCC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	552
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	552
Bsp119I	TTCGAA	1 cut(s)	481
Bsp1407I	TGTACA	2 cut(s)	195, 461
Bsp143I	GATC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	1 cut(s)	173
BspMAI	CTGCAG	1 cut(s)	21
BspT104I	TTCGAA	1 cut(s)	481
BsrGI	TGTACA	2 cut(s)	195, 461
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	551
BssMI	GATC	1 cut(s)	70
Bst2UI	CCWGG	2 cut(s)	26, 437
Bst4CI	ACNGT	4 cut(s)	171, 195, 200, 251
BstAUI	TGTACA	2 cut(s)	195, 461
BstBI	TTCGAA	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	160
BstF5I	GGATG	2 cut(s)	232, 341
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	2 cut(s)	26, 437
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	24, 435
BstSFI	CTRYAG	2 cut(s)	17, 207
BstV1I	GCAGC	4 cut(s)	31, 70, 88, 307
BsuRI	GGCC	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	232, 341
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	196, 462
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	2 cut(s)	235, 459
CviJI	RGCY	8 cut(s)	45, 91, 164, 205, 223, 272, 320, 347
CviKI_1	RGCY	8 cut(s)	45, 91, 164, 205, 223, 272, 320, 347
CviQI	GTAC	2 cut(s)	196, 462
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
DraI	TTTAAA	1 cut(s)	304
Eco147I	AGGCCT	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	325
Eco88I	CYCGRG	1 cut(s)	552
EcoRII	CCWGG	2 cut(s)	24, 435
FaeI	CATG	2 cut(s)	238, 462
FaiI	YATR	8 cut(s)	209, 236, 275, 460, 473, 543, 545, 547
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FatI	CATG	2 cut(s)	234, 458
Fnu4HI	GCNGC	4 cut(s)	20, 59, 77, 321
FokI	GGATG	2 cut(s)	239, 348
Fsp4HI	GCNGC	4 cut(s)	20, 59, 77, 321
FspBI	CTAG	2 cut(s)	165, 425
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	4 cut(s)	20, 59, 77, 321
GsuI	CTGGAG	2 cut(s)	113, 458
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	238, 462
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	158, 385
HphI	GGTGA	2 cut(s)	292, 380
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	2 cut(s)	37, 554
HpyCH4III	ACNGT	4 cut(s)	171, 195, 200, 251
HpyCH4V	TGCA	5 cut(s)	19, 103, 113, 238, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	1 cut(s)	160
Hsp92II	CATG	2 cut(s)	238, 462
HspAI	GCGC	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	3 cut(s)	269, 299, 439
Lsp1109I	GCAGC	4 cut(s)	31, 70, 88, 307
LweI	GCATC	3 cut(s)	100, 326, 379
MaeI	CTAG	2 cut(s)	165, 425
MaeIII	GTNAC	2 cut(s)	62, 139
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	2 cut(s)	295, 458
MluCI	AATT	7 cut(s)	80, 98, 121, 135, 299, 308, 397
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	8 cut(s)	44, 77, 88, 124, 375, 430, 507, 561
MseI	TTAA	2 cut(s)	303, 567
MspA1I	CMGCKG	1 cut(s)	91
MspR9I	CCNGG	2 cut(s)	26, 437
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	2 cut(s)	26, 437
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	238, 462
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	238
NspV	TTCGAA	1 cut(s)	481
PceI	AGGCCT	1 cut(s)	205
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	4 cut(s)	21, 60, 78, 322
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	24, 435
PspGI	CCWGG	2 cut(s)	24, 435
PstI	CTGCAG	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	2 cut(s)	197, 463
RsaNI	GTAC	2 cut(s)	196, 462
SaqAI	TTAA	2 cut(s)	303, 567
SatI	GCNGC	4 cut(s)	20, 59, 77, 321
Sau3AI	GATC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	26, 437
SfaNI	GCATC	3 cut(s)	100, 326, 379
SfcI	CTRYAG	2 cut(s)	17, 207
SfuI	TTCGAA	1 cut(s)	481
SmlI	CTYRAG	4 cut(s)	35, 379, 392, 510
SmoI	CTYRAG	4 cut(s)	35, 379, 392, 510
Sse9I	AATT	7 cut(s)	80, 98, 121, 135, 299, 308, 397
SseBI	AGGCCT	1 cut(s)	205
SspMI	CTAG	2 cut(s)	165, 425
StuI	AGGCCT	1 cut(s)	205
StyD4I	CCNGG	2 cut(s)	24, 435
TaaI	ACNGT	4 cut(s)	171, 195, 200, 251
TaqI	TCGA	2 cut(s)	69, 481
TasI	AATT	7 cut(s)	80, 98, 121, 135, 299, 308, 397
TatI	WGTACW	2 cut(s)	195, 461
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	2 cut(s)	303, 567
Tru9I	TTAA	2 cut(s)	303, 567
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	4 cut(s)	19, 58, 76, 320
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	303, 447
TspRI	CASTG	1 cut(s)	198
XapI	RAATTY	2 cut(s)	121, 308
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	2 cut(s)	165, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.