Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Forward (+)

5499155 .. 5500474

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG065800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCAGACAGCAACAGCTTGCGCAATCAAATTTCCACCTTGAGGCAGTCTTTCTTTGATGAGGGAATGCTTGACAAGCACTTTGTCCAACTCGAAGAGTTGGAAGAAGAGAATCCTCACTTTGCTGAGGAGGTGATGACCATGTTTTTCAGGGACTCTACCAAACTGATAGCTACTGTGGAGCATGCTCTCCAAACACCACCCTATGATCTCCCACAGATAGATCAATATCTCCATCAGCTCAAAGGTAGCAGCTCCAGCGTTGGTGCTGCCAAGGTGTGGAGTGAAATAAACAAACTGAGGGCACTTCTGAAAGATGGAGAAATGGAGAGATGCTCAGGCAACTTGATCCTTGAGACCCCTCAGCGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

Hpt

Protein Analysis

124

Amino Acids

14.23

Weight (kDa)

5.03

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	44 - 113	1.1e-09	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	279
AclWI	GGATC	1 cut(s)	343
AcsI	RAATTY	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	42, 279
AluBI	AGCT	4 cut(s)	18, 173, 241, 255
AluI	AGCT	4 cut(s)	18, 173, 241, 255
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	1 cut(s)	343
ApeKI	GCWGC	2 cut(s)	252, 269
ApoI	RAATTY	1 cut(s)	30
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspLEI	GCGC	2 cut(s)	24, 369
AsuHPI	GGTGA	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	307
BbvCI	CCTCAGC	2 cut(s)	126, 363
BbvI	GCAGC	2 cut(s)	256, 264
BccI	CCATC	2 cut(s)	243, 311
BcoDI	GTCTC	1 cut(s)	350
BisI	GCNGC	2 cut(s)	253, 270
BlsI	GCNGC	2 cut(s)	254, 271
BmsI	GCATC	1 cut(s)	323
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpmI	CTGGAG	1 cut(s)	241
Bpu10I	CCTNAGC	3 cut(s)	126, 337, 363
BpuEI	CTTGAG	2 cut(s)	61, 374
BsaBI	GATNNNNATC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 279
Bse8I	GATNNNNATC	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	42, 279
BseMII	CTCAG	3 cut(s)	117, 290, 351
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	256, 264
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	42, 279
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	3 cut(s)	208, 223, 348
BspCNI	CTCAG	3 cut(s)	118, 291, 350
BspPI	GGATC	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	350
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	3 cut(s)	208, 223, 348
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	2 cut(s)	90, 102
BstC8I	GCNNGC	2 cut(s)	20, 186
BstDEI	CTNAG	4 cut(s)	126, 299, 337, 363
BstHHI	GCGC	2 cut(s)	24, 369
BstKTI	GATC	3 cut(s)	211, 226, 351
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	3 cut(s)	208, 223, 348
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 258
BstNSI	RCATGY	1 cut(s)	188
BstSLI	GKGCMC	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	256, 264
Cac8I	GCNNGC	2 cut(s)	20, 186
CfoI	GCGC	2 cut(s)	24, 369
CviAII	CATG	2 cut(s)	142, 185
CviJI	RGCY	4 cut(s)	18, 173, 241, 255
CviKI_1	RGCY	4 cut(s)	18, 173, 241, 255
DdeI	CTNAG	4 cut(s)	126, 299, 337, 363
DpnI	GATC	3 cut(s)	210, 225, 350
DpnII	GATC	3 cut(s)	208, 223, 348
Eam1104I	CTCTTC	2 cut(s)	90, 102
EarI	CTCTTC	2 cut(s)	90, 102
Eco130I	CCWWGG	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	350
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	2 cut(s)	145, 188
FaiI	YATR	3 cut(s)	143, 186, 207
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	2 cut(s)	141, 184
Fnu4HI	GCNGC	2 cut(s)	253, 270
Fsp4HI	GCNGC	2 cut(s)	253, 270
FspI	TGCGCA	1 cut(s)	23
GlaI	GCGC	2 cut(s)	23, 368
GluI	GCNGC	2 cut(s)	253, 270
GsuI	CTGGAG	1 cut(s)	241
HhaI	GCGC	2 cut(s)	24, 369
Hin1II	CATG	2 cut(s)	145, 188
Hin6I	GCGC	2 cut(s)	22, 367
HinP1I	GCGC	2 cut(s)	22, 367
HinfI	GANTC	2 cut(s)	112, 155
HphI	GGTGA	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	312
HpyCH4III	ACNGT	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 258
HpyF3I	CTNAG	4 cut(s)	126, 299, 337, 363
Hsp92II	CATG	2 cut(s)	145, 188
HspAI	GCGC	2 cut(s)	22, 367
Kzo9I	GATC	3 cut(s)	208, 223, 348
LmnI	GCTCC	2 cut(s)	181, 260
LpnPI	CCDG	3 cut(s)	136, 271, 324
Lsp1109I	GCAGC	2 cut(s)	256, 264
LweI	GCATC	1 cut(s)	323
MalI	GATC	3 cut(s)	210, 225, 350
MboI	GATC	3 cut(s)	208, 223, 348
MboII	GAAGA	3 cut(s)	107, 116, 119
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	81, 112
MnlI	CCTC	7 cut(s)	36, 55, 121, 124, 126, 294, 372
Mva1269I	GAATGC	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	76, 258
NdeII	GATC	3 cut(s)	208, 223, 348
NlaIII	CATG	2 cut(s)	145, 188
NsbI	TGCGCA	1 cut(s)	23
NspI	RCATGY	1 cut(s)	188
PaeI	GCATGC	1 cut(s)	188
PctI	GAATGC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	254, 271
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
SatI	GCNGC	2 cut(s)	253, 270
Sau3AI	GATC	3 cut(s)	208, 223, 348
SchI	GAGTC	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	8 cut(s)	20, 41, 135, 175, 243, 250, 257, 279
SfaNI	GCATC	1 cut(s)	323
SmlI	CTYRAG	2 cut(s)	40, 353
SmoI	CTYRAG	2 cut(s)	40, 353
SphI	GCATGC	1 cut(s)	188
Sse9I	AATT	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	112
TseI	GCWGC	2 cut(s)	252, 269
Van91I	CCANNNNNTGG	1 cut(s)	279
XapI	RAATTY	1 cut(s)	30
XceI	RCATGY	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.