Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Reverse (-)

19750325 .. 19751320

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G220400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAATATACATATGTTGCAGGAAATTCTGGACACGCAGTTTATGCAGATGGAGCAATTGGAAGATGTTGACAATCCCAACTTCGCAGAGGAGGTTATGACCTTGTACTTTAGGGACTCTACGAAACTGATAGCTACTGTGGAGCAAGCACTGGAGAAACCCCCCTATGATGTCAACAAGCTGGACAAGTCCCTCCATCAGCTCAAAGGTAGCAGCGCCAGCGTTGGTGCTAACAAGGTTTGGATCGAGACGAACCAGATGAGGGAAAGTATCAAGGCAGGGGACCTCGAAGGGACCAAGGCTCAGCTCCAGCTGATTAAGCTAGCTCATGAGACTCTAAGAGGGAAAGTAGAGCCTTACTTTCATCTGGTGCGACAAGTTGGACCTTCAGAGACTGCTCAGCGCCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

138

Amino Acids

15.64

Weight (kDa)

5.56

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	1 cut(s)	372
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	262
AluBI	AGCT	7 cut(s)	134, 181, 202, 307, 313, 322, 326
AluI	AGCT	7 cut(s)	134, 181, 202, 307, 313, 322, 326
Alw26I	GTCTC	3 cut(s)	242, 326, 386
AlwI	GGATC	1 cut(s)	251
AlwNI	CAGNNNCTG	1 cut(s)	395
ApeKI	GCWGC	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	218, 405
AspS9I	GGNCC	3 cut(s)	283, 294, 383
AsuNHI	GCTAGC	1 cut(s)	322
AvaII	GGWCC	3 cut(s)	283, 294, 383
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	43, 204
BcoDI	GTCTC	3 cut(s)	242, 326, 386
BfaI	CTAG	1 cut(s)	323
BfoI	RGCGCY	2 cut(s)	219, 406
BisI	GCNGC	1 cut(s)	214
BlpI	GCTNAGC	2 cut(s)	303, 399
BlsI	GCNGC	1 cut(s)	215
Bme18I	GGWCC	3 cut(s)	283, 294, 383
BmgT120I	GGNCC	3 cut(s)	283, 294, 383
BmiI	GGNNCC	2 cut(s)	284, 295
BmtI	GCTAGC	1 cut(s)	326
BpmI	CTGGAG	2 cut(s)	173, 293
Bpu1102I	GCTNAGC	2 cut(s)	303, 399
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	2 cut(s)	317, 413
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	225
BslFI	GGGAC	4 cut(s)	128, 175, 296, 307
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	3 cut(s)	242, 326, 386
BsmBI	CGTCTC	1 cut(s)	242
BsmFI	GGGAC	4 cut(s)	128, 175, 296, 307
Bsp143I	GATC	1 cut(s)	243
Bsp1720I	GCTNAGC	2 cut(s)	303, 399
BspCNI	CTCAG	2 cut(s)	316, 412
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	284, 295
BspOI	GCTAGC	1 cut(s)	326
BspPI	GGATC	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	139
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstC8I	GCNNGC	3 cut(s)	147, 220, 324
BstDEI	CTNAG	3 cut(s)	303, 338, 399
BstH2I	RGCGCY	2 cut(s)	219, 406
BstHHI	GCGC	2 cut(s)	218, 405
BstKTI	GATC	1 cut(s)	246
BstMAI	GTCTC	3 cut(s)	242, 326, 386
BstMBI	GATC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 52, 219, 319
BstV1I	GCAGC	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	3 cut(s)	147, 220, 324
CaiI	CAGNNNCTG	1 cut(s)	395
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	2 cut(s)	218, 405
Cfr13I	GGNCC	3 cut(s)	283, 294, 383
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	9 cut(s)	134, 181, 202, 302, 307, 313, 322, 326, 355
CviKI_1	RGCY	9 cut(s)	134, 181, 202, 302, 307, 313, 322, 326, 355
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	3 cut(s)	303, 338, 399
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	297
Eco47I	GGWCC	3 cut(s)	283, 294, 383
Eco57I	CTGAAG	1 cut(s)	372
EcoO109I	RGGNCCY	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	1 cut(s)	332
FaiI	YATR	7 cut(s)	8, 12, 14, 44, 98, 168, 330
FaqI	GGGAC	4 cut(s)	128, 175, 296, 307
FatI	CATG	1 cut(s)	328
FauNDI	CATATG	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	214
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	2 cut(s)	217, 404
GluI	GCNGC	1 cut(s)	214
GsuI	CTGGAG	2 cut(s)	173, 293
HaeII	RGCGCY	2 cut(s)	219, 406
HhaI	GCGC	2 cut(s)	218, 405
Hin1II	CATG	1 cut(s)	332
Hin6I	GCGC	2 cut(s)	216, 403
HinP1I	GCGC	2 cut(s)	216, 403
HincII	GTYRAC	2 cut(s)	70, 175
HindII	GTYRAC	2 cut(s)	70, 175
HinfI	GANTC	2 cut(s)	116, 334
Hpy166II	GTNNAC	2 cut(s)	70, 175
Hpy188I	TCNGA	1 cut(s)	391
Hpy188III	TCNNGA	3 cut(s)	29, 247, 329
Hpy8I	GTNNAC	2 cut(s)	70, 175
HpyAV	CCTTC	2 cut(s)	284, 396
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	19, 46
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 52, 219, 319
HpyF3I	CTNAG	3 cut(s)	303, 338, 399
Hsp92II	CATG	1 cut(s)	332
HspAI	GCGC	2 cut(s)	216, 403
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	3 cut(s)	52, 142, 312
LpnPI	CCDG	9 cut(s)	5, 14, 137, 167, 232, 264, 269, 323, 353
Lsp1109I	GCAGC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	323
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MboII	GAAGA	1 cut(s)	74
MfeI	CAATTG	1 cut(s)	56
MluCI	AATT	2 cut(s)	24, 56
MlyI	GAGTC	2 cut(s)	110, 328
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	6 cut(s)	82, 85, 203, 255, 296, 335
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	313
MunI	CAATTG	1 cut(s)	56
MwoI	GCNNNNNNNGC	4 cut(s)	43, 52, 219, 319
NdeI	CATATG	1 cut(s)	12
NdeII	GATC	1 cut(s)	243
NheI	GCTAGC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	2 cut(s)	284, 295
PagI	TCATGA	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	2 cut(s)	110, 328
PpsI	GAGTC	2 cut(s)	110, 328
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	284, 295
PspPI	GGNCC	3 cut(s)	283, 294, 383
PspPPI	RGGWCCY	1 cut(s)	283
PstNI	CAGNNNCTG	1 cut(s)	395
PvuII	CAGCTG	1 cut(s)	313
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	1 cut(s)	243
Sau96I	GGNCC	3 cut(s)	283, 294, 383
SchI	GAGTC	2 cut(s)	110, 328
SinI	GGWCC	3 cut(s)	283, 294, 383
Sse9I	AATT	2 cut(s)	24, 56
SspMI	CTAG	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	2 cut(s)	246, 288
TasI	AATT	2 cut(s)	24, 56
TatI	WGTACW	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	1 cut(s)	213
TspDTI	ATGAA	2 cut(s)	17, 353
TspRI	CASTG	1 cut(s)	156
VpaK11BI	GGWCC	3 cut(s)	283, 294, 383
XapI	RAATTY	1 cut(s)	24
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.