Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Reverse (-)

15368687 .. 15370112

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G178800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGACAAGAACCAGAGGCAGGTTCGTCTCATGAGGCAGTCCCTCTTTGATCAGGGATTTCTGGACGAGCAGTTTATTCAGTTGGAGGAGCTGCAAGATGATGCTAACCCAAATTTTGTGGAGGAAATTGCTACATCCTACTACCAAGATTCATCTAGATCACTCCAAACCATAGAGCTGGCGCTAGAGAAGACCCCTCATGATTTTAATAAATTGGACGGCTACATGCATCAGTTCAAGGGAAGTAGCTCAAGCATCGGAGCCAAAAAGGTAAAAGCTGAGTGCCAACAGTTTAGGGAATATTGCAAGGCAGGAAATGGAGAAGGATGCATGAGGACTTTCCAAGCATTGAAGAGAGAACATGCAACACTGAAGAAGAGGCTTGAGGCTTATTTTCAGTTGGCAAGGCAAGCTGGACCTATTGAGACAGCACGTCGCCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

149

Amino Acids

17.17

Weight (kDa)

8.41

Isoelectric Point (pI)

60.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	238, 352
AhdI	GACNNNNNGTC	1 cut(s)	432
AjiI	CACGTC	1 cut(s)	434
AluBI	AGCT	5 cut(s)	91, 178, 249, 278, 413
AluI	AGCT	5 cut(s)	91, 178, 249, 278, 413
Alw26I	GTCTC	2 cut(s)	32, 419
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	78
BceAI	ACGGC	1 cut(s)	235
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	32, 419
BfaI	CTAG	2 cut(s)	156, 185
BfoI	RGCGCY	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	10
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	416
BmeRI	GACNNNNNGTC	1 cut(s)	432
BmgBI	CACGTC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	262
BmsI	GCATC	4 cut(s)	91, 238, 264, 317
BpiI	GAAGAC	1 cut(s)	197
BpuEI	CTTGAG	2 cut(s)	235, 404
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
BseGI	GGATG	2 cut(s)	134, 332
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	2 cut(s)	32, 419
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	49, 158
BspCNI	CTCAG	1 cut(s)	271
BspHI	TCATGA	2 cut(s)	30, 199
BspLI	GGNNCC	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	10
BssMI	GATC	2 cut(s)	49, 158
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	2 cut(s)	347, 371
BstC8I	GCNNGC	2 cut(s)	180, 411
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	134, 332
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	2 cut(s)	52, 161
BstMAI	GTCTC	2 cut(s)	32, 419
BstMBI	GATC	2 cut(s)	49, 158
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNSI	RCATGY	2 cut(s)	229, 365
BstV1I	GCAGC	1 cut(s)	78
BstV2I	GAAGAC	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	178
BtrI	CACGTC	1 cut(s)	434
BtsCI	GGATG	2 cut(s)	134, 332
BtsIMutI	CAGTG	1 cut(s)	368
BveI	ACCTGC	1 cut(s)	10
Cac8I	GCNNGC	2 cut(s)	180, 411
CciI	TCATGA	2 cut(s)	30, 199
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	416
CspCI	CAANNNNNGTGG	2 cut(s)	99, 134
CviAII	CATG	5 cut(s)	31, 200, 226, 331, 362
CviJI	RGCY	9 cut(s)	91, 178, 222, 249, 263, 278, 382, 389, 413
CviKI_1	RGCY	9 cut(s)	91, 178, 222, 249, 263, 278, 382, 389, 413
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	2 cut(s)	51, 160
DpnII	GATC	2 cut(s)	49, 158
DriI	GACNNNNNGTC	1 cut(s)	432
Eam1104I	CTCTTC	2 cut(s)	347, 371
Eam1105I	GACNNNNNGTC	1 cut(s)	432
EarI	CTCTTC	2 cut(s)	347, 371
Eco47I	GGWCC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	392
EcoT22I	ATGCAT	2 cut(s)	231, 332
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	5 cut(s)	34, 203, 229, 334, 365
FaiI	YATR	6 cut(s)	32, 173, 201, 227, 332, 363
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	5 cut(s)	30, 199, 225, 330, 361
FbaI	TGATCA	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	2 cut(s)	121, 339
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	2 cut(s)	156, 185
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	185
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	5 cut(s)	34, 203, 229, 334, 365
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	4 cut(s)	31, 62, 156, 200
Hpy99I	CGWCG	1 cut(s)	438
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	5 cut(s)	94, 229, 306, 330, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	5 cut(s)	34, 203, 229, 334, 365
HspAI	GCGC	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	49, 158
LmnI	GCTCC	2 cut(s)	88, 260
LpnPI	CCDG	7 cut(s)	5, 26, 38, 47, 164, 297, 399
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	4 cut(s)	91, 238, 264, 317
MaeI	CTAG	2 cut(s)	156, 185
MaeII	ACGT	1 cut(s)	433
MalI	GATC	2 cut(s)	51, 160
MboI	GATC	2 cut(s)	49, 158
MboII	GAAGA	4 cut(s)	202, 364, 385, 388
MluCI	AATT	3 cut(s)	112, 126, 212
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	9 cut(s)	9, 27, 53, 79, 115, 207, 327, 372, 379
Mph1103I	ATGCAT	2 cut(s)	231, 332
MseI	TTAA	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	2 cut(s)	49, 158
NlaIII	CATG	5 cut(s)	34, 203, 229, 334, 365
NlaIV	GGNNCC	1 cut(s)	262
NsiI	ATGCAT	2 cut(s)	231, 332
NspI	RCATGY	2 cut(s)	229, 365
PagI	TCATGA	2 cut(s)	30, 199
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	49, 158
Sau96I	GGNCC	1 cut(s)	416
SetI	ASST	9 cut(s)	24, 93, 180, 251, 273, 280, 415, 421, 436
SfaNI	GCATC	4 cut(s)	91, 238, 264, 317
SinI	GGWCC	1 cut(s)	416
SmlI	CTYRAG	2 cut(s)	250, 383
SmoI	CTYRAG	2 cut(s)	250, 383
Sse9I	AATT	3 cut(s)	112, 126, 212
SspI	AATATT	1 cut(s)	302
SspMI	CTAG	2 cut(s)	156, 185
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	1 cut(s)	436
TasI	AATT	3 cut(s)	112, 126, 212
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	375
TseI	GCWGC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	1 cut(s)	112
XbaI	TCTAGA	1 cut(s)	155
XceI	RCATGY	2 cut(s)	229, 365
XspI	CTAG	2 cut(s)	156, 185
Zsp2I	ATGCAT	2 cut(s)	231, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.