Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Forward (+)

55626556 .. 55628387

Gene Structure 1832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G033910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAAAGAAACAATATCCGTAGGCAGGTTGCTCTGATGAGGCAGTCCCTCTTTACTCAGGGATATCTGGATGAACAGTTTGTTCAGTTGGAGGAGCTGCAAGATGATACTAATCCAAATTTTGTGGAGGAAATTGCTACATTGTACTACCGTGATTCATGCAGATCACTCCAAACCATAGAGCAGTCATTAGAGAAAACCCCTCACGATTTCAATAAGTTGGACAATCATATGCATCAATTCAAGGGAAGTAGCTCAAGCATCGGAGCCAAGAAGGTGAAAGCTGAATGCCAACAGTTCAGAGAATATTGCAGGGCAGGAAATGGAGAAGGATGCATGAGAACTTTCCAACTATTGAAGAAAGAACATGCAACTCTGAAAAAGAAGCTTGAGGCTTATTTTCAGATGGCAAGGCAAGCTGGGCCAATTGTGACTGCAAGTCGTCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

150

Amino Acids

17.47

Weight (kDa)

8.9

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 127	2.3e-13	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	118
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	214, 244, 358
AhdI	GACNNNNNGTC	1 cut(s)	438
AluBI	AGCT	5 cut(s)	97, 255, 284, 388, 419
AluI	AGCT	5 cut(s)	97, 255, 284, 388, 419
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	1 cut(s)	400
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
BmeRI	GACNNNNNGTC	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	3 cut(s)	244, 270, 323
BpuEI	CTTGAG	2 cut(s)	241, 410
BsaBI	GATNNNNATC	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	111
BseGI	GGATG	2 cut(s)	76, 338
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	84
BseYI	CCCAGC	1 cut(s)	419
BshFI	GGCC	1 cut(s)	424
BslFI	GGGAC	2 cut(s)	31, 429
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmFI	GGGAC	2 cut(s)	31, 429
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	424
Bsp143I	GATC	1 cut(s)	164
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	16
BssMI	GATC	1 cut(s)	164
Bst4CI	ACNGT	3 cut(s)	78, 152, 297
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	76, 338
BstKTI	GATC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 421
BstNSI	RCATGY	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	76, 338
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	417
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	145
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	3 cut(s)	159, 337, 368
CviJI	RGCY	8 cut(s)	97, 255, 269, 284, 388, 395, 419, 424
CviKI_1	RGCY	8 cut(s)	97, 255, 269, 284, 388, 395, 419, 424
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
DriI	GACNNNNNGTC	1 cut(s)	438
Eam1105I	GACNNNNNGTC	1 cut(s)	438
Eco32I	GATATC	1 cut(s)	65
EcoRV	GATATC	1 cut(s)	65
EcoT22I	ATGCAT	2 cut(s)	237, 338
FaeI	CATG	3 cut(s)	162, 340, 371
FaiI	YATR	6 cut(s)	160, 179, 231, 233, 338, 369
FaqI	GGGAC	2 cut(s)	31, 429
FatI	CATG	3 cut(s)	158, 336, 367
FauNDI	CATATG	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	2 cut(s)	83, 345
Fsp4HI	GCNGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	98
GsaI	CCCAGC	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	424
Hin1II	CATG	3 cut(s)	162, 340, 371
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	1 cut(s)	289
Hpy188I	TCNGA	5 cut(s)	36, 266, 302, 378, 405
Hpy188III	TCNNGA	2 cut(s)	68, 206
HpyAV	CCTTC	2 cut(s)	268, 323
HpyCH4III	ACNGT	3 cut(s)	78, 152, 297
HpyCH4V	TGCA	7 cut(s)	100, 162, 235, 312, 336, 371, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 421
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	162, 340, 371
Kzo9I	GATC	1 cut(s)	164
LmnI	GCTCC	2 cut(s)	94, 266
LpnPI	CCDG	6 cut(s)	11, 44, 53, 298, 303, 405
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	3 cut(s)	244, 270, 323
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MboII	GAAGA	1 cut(s)	370
MfeI	CAATTG	1 cut(s)	426
MluCI	AATT	4 cut(s)	118, 132, 239, 426
MmeI	TCCRAC	3 cut(s)	69, 201, 373
MnlI	CCTC	6 cut(s)	33, 59, 85, 121, 213, 385
Mph1103I	ATGCAT	2 cut(s)	237, 338
MunI	CAATTG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	416, 421
NdeI	CATATG	1 cut(s)	231
NdeII	GATC	1 cut(s)	164
NlaIII	CATG	3 cut(s)	162, 340, 371
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	430
NsiI	ATGCAT	2 cut(s)	237, 338
NspI	RCATGY	1 cut(s)	371
PctI	GAATGC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	419
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	422
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	1 cut(s)	164
Sau96I	GGNCC	1 cut(s)	422
SetI	ASST	7 cut(s)	30, 99, 257, 279, 286, 390, 421
SfaNI	GCATC	3 cut(s)	244, 270, 323
SmlI	CTYRAG	2 cut(s)	256, 389
SmoI	CTYRAG	2 cut(s)	256, 389
Sse9I	AATT	4 cut(s)	118, 132, 239, 426
SspI	AATATT	1 cut(s)	308
TaaI	ACNGT	3 cut(s)	78, 152, 297
TasI	AATT	4 cut(s)	118, 132, 239, 426
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	155
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	2 cut(s)	87, 147
TspGWI	ACGGA	1 cut(s)	8
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	1 cut(s)	371
Zsp2I	ATGCAT	2 cut(s)	237, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.