Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Reverse (-)

26047374 .. 26048661

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGAAGTTCTCTCATTGAACAGCATTACTTGGATCAGCAGCAATTTGTCCAGCTGGAGGATTTGGAAGACGATAGTAACCCAAACTTTGTGGAGGAAATTGTGACATTGTTCTACAAAGACTCGGCTAGACTCTTCCAAAAGATTGATCAAGCACTGCATAGTACACCTATGGATTTCTCCAGGCTGGATGATTACATGCACCAGTTCAAGGGTAGTAGCTCAAGCATCGGAGCTGTAAAGGTGAAGAATGAATGCACACAATTCAAAGAATTTTGTCTGGCTGGAAATGCTGAAGGATGCTTGAGGGCTTTCCAGAGAGTGAAACATGAGCATGAGGCATTGAAGAGGCAGCTTGAAACTTATTTTCAGTTGAGAAGACAAGCTGGAATGGCTCAAAGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035556 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

136

Amino Acids

15.8

Weight (kDa)

5.94

Isoelectric Point (pI)

61.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	33 - 117	4e-12	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	272
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	2 cut(s)	58, 211
AgsI	TTSAA	5 cut(s)	20, 211, 268, 346, 359
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	5 cut(s)	55, 222, 236, 355, 386
AluI	AGCT	5 cut(s)	55, 222, 236, 355, 386
AlwI	GGATC	1 cut(s)	42
ApeKI	GCWGC	2 cut(s)	40, 352
ApoI	RAATTY	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	256
BbsI	GAAGAC	2 cut(s)	75, 385
BbvI	GCAGC	2 cut(s)	52, 364
BciT130I	CCWGG	1 cut(s)	184
BclI	TGATCA	1 cut(s)	148
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	2 cut(s)	41, 353
BlsI	GCNGC	2 cut(s)	42, 354
Bme1390I	CCNGG	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	2 cut(s)	237, 290
BpiI	GAAGAC	2 cut(s)	75, 385
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	2 cut(s)	77, 166
BpuEI	CTTGAG	2 cut(s)	208, 325
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 211
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	184
BseGI	GGATG	2 cut(s)	196, 305
BseLI	CCNNNNNNNGG	2 cut(s)	58, 211
BseNI	ACTGG	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	52, 364
BslI	CCNNNNNNNGG	2 cut(s)	58, 211
BsmI	GAATGC	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	34, 148
BspPI	GGATC	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	205
BssMI	GATC	2 cut(s)	34, 148
Bst2UI	CCWGG	1 cut(s)	184
Bst6I	CTCTTC	2 cut(s)	140, 341
BstF5I	GGATG	2 cut(s)	196, 305
BstKTI	GATC	2 cut(s)	37, 151
BstMBI	GATC	2 cut(s)	34, 148
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 392
BstNI	CCWGG	1 cut(s)	184
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	52, 364
BstV2I	GAAGAC	2 cut(s)	75, 385
BtsCI	GGATG	2 cut(s)	196, 305
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	165
CspCI	CAANNNNNGTGG	2 cut(s)	72, 107
CviAII	CATG	3 cut(s)	199, 329, 335
CviQI	GTAC	1 cut(s)	165
DpnI	GATC	2 cut(s)	36, 150
DpnII	GATC	2 cut(s)	34, 148
Eam1104I	CTCTTC	2 cut(s)	140, 341
EarI	CTCTTC	2 cut(s)	140, 341
Eco57I	CTGAAG	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	182
FaeI	CATG	3 cut(s)	202, 332, 338
FaiI	YATR	5 cut(s)	162, 173, 200, 330, 336
FatI	CATG	3 cut(s)	198, 328, 334
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	41, 353
FokI	GGATG	2 cut(s)	203, 312
Fsp4HI	GCNGC	2 cut(s)	41, 353
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	2 cut(s)	41, 353
GsuI	CTGGAG	2 cut(s)	77, 166
Hin1II	CATG	3 cut(s)	202, 332, 338
HinfI	GANTC	2 cut(s)	122, 132
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	2 cut(s)	316, 405
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	290
HpyCH4V	TGCA	3 cut(s)	160, 202, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 392
Hsp92II	CATG	3 cut(s)	202, 332, 338
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	34, 148
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	2 cut(s)	52, 364
LweI	GCATC	2 cut(s)	237, 290
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	77, 103
MalI	GATC	2 cut(s)	36, 150
MboI	GATC	2 cut(s)	34, 148
MboII	GAAGA	5 cut(s)	80, 127, 259, 358, 390
MluCI	AATT	4 cut(s)	44, 99, 263, 272
MlyI	GAGTC	2 cut(s)	116, 126
MnlI	CCTC	5 cut(s)	52, 88, 300, 331, 342
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	184
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	290, 392
NdeII	GATC	2 cut(s)	34, 148
NlaIII	CATG	3 cut(s)	202, 332, 338
NmeAIII	GCCGAG	1 cut(s)	104
NmuCI	GTSAC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	202
PctI	GAATGC	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	42, 354
PleI	GAGTC	2 cut(s)	116, 126
PpsI	GAGTC	2 cut(s)	116, 126
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	333
SatI	GCNGC	2 cut(s)	41, 353
Sau3AI	GATC	2 cut(s)	34, 148
SchI	GAGTC	2 cut(s)	116, 126
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	8 cut(s)	57, 172, 224, 238, 246, 357, 388, 404
SfaNI	GCATC	2 cut(s)	237, 290
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	2 cut(s)	223, 304
SmoI	CTYRAG	2 cut(s)	223, 304
Sse9I	AATT	4 cut(s)	44, 99, 263, 272
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	182
TasI	AATT	4 cut(s)	44, 99, 263, 272
TatI	WGTACW	1 cut(s)	164
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	40, 352
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	162
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	202
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.