Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Forward (+)

25428114 .. 25430231

Gene Structure 2118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32380.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAAAGAAACCAAATGCGCAGGCAGGTTGGTCTGATGAGGCAGTCCCTCTTTACTCAGGGATATCTGGATGAACAGTTTATTCAGTTGGAGGAGCTGCAAGATGATGCTAATCCCAATTTTGTAGAGGAAATTGCTACATTGTACTACCGTGATTCATCTAGATCACTCCAAACCATAGAGCAGGCATTAGAGAAAACCCCTCATGATTTCAGTAAGTTGGACAATCATATGCATCAGTTCAAGGGAAGTAGCTCAAGCATCGGAGCCAAAAAGGTGAAAGCTGAATGCCAACAGTTCAGGGAATTCTGTAAGACAGGAAATGGAGAAGGATGCATGAGAACTTTCCAACTATTGAAGAAAGAACATGCAACTCTGAAAAAGAAGCTCGAGGCTTATTTTCAGATGGCAAGGCAAGCAGGGCCAATTGCGAGTGCAAGTCGTCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

151

Amino Acids

17.36

Weight (kDa)

8.99

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 127	4.2e-13	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	20
Acc36I	ACCTGC	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	305
AfaI	GTAC	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	244, 358
AluBI	AGCT	4 cut(s)	97, 255, 284, 388
AluI	AGCT	4 cut(s)	97, 255, 284, 388
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	1 cut(s)	400
BfaI	CTAG	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	4 cut(s)	97, 244, 270, 323
BpuEI	CTTGAG	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	111
BseGI	GGATG	2 cut(s)	76, 338
BseJI	GATNNNNATC	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	424
BsiHKCI	CYCGRG	1 cut(s)	389
BslFI	GGGAC	2 cut(s)	31, 429
BsmFI	GGGAC	2 cut(s)	31, 429
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	424
BsoBI	CYCGRG	1 cut(s)	389
Bsp143I	GATC	1 cut(s)	164
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	1 cut(s)	70
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	16
BssMI	GATC	1 cut(s)	164
Bst4CI	ACNGT	3 cut(s)	78, 152, 297
BstC8I	GCNNGC	3 cut(s)	23, 186, 417
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	76, 338
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 421
BstNSI	RCATGY	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	76, 338
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	3 cut(s)	23, 186, 417
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	3 cut(s)	206, 337, 368
CviJI	RGCY	7 cut(s)	97, 255, 269, 284, 388, 395, 424
CviKI_1	RGCY	7 cut(s)	97, 255, 269, 284, 388, 395, 424
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
Eco32I	GATATC	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	389
EcoRI	GAATTC	1 cut(s)	305
EcoRV	GATATC	1 cut(s)	65
EcoT22I	ATGCAT	2 cut(s)	237, 338
FaeI	CATG	3 cut(s)	209, 340, 371
FaiI	YATR	6 cut(s)	179, 207, 231, 233, 338, 369
FaqI	GGGAC	2 cut(s)	31, 429
FatI	CATG	3 cut(s)	205, 336, 367
FauNDI	CATATG	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	2 cut(s)	83, 345
Fsp4HI	GCNGC	1 cut(s)	98
FspBI	CTAG	1 cut(s)	162
FspI	TGCGCA	1 cut(s)	20
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	424
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	3 cut(s)	209, 340, 371
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	1 cut(s)	289
Hpy188I	TCNGA	4 cut(s)	36, 266, 378, 405
Hpy188III	TCNNGA	3 cut(s)	68, 162, 206
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	3 cut(s)	78, 152, 297
HpyCH4V	TGCA	5 cut(s)	100, 235, 336, 371, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 421
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	209, 340, 371
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	164
LmnI	GCTCC	2 cut(s)	94, 266
LpnPI	CCDG	8 cut(s)	7, 11, 44, 53, 170, 286, 303, 405
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	4 cut(s)	97, 244, 270, 323
MaeI	CTAG	1 cut(s)	162
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MboII	GAAGA	1 cut(s)	370
MfeI	CAATTG	1 cut(s)	426
MluCI	AATT	4 cut(s)	118, 132, 305, 426
MmeI	TCCRAC	3 cut(s)	69, 201, 373
MnlI	CCTC	6 cut(s)	33, 59, 85, 121, 213, 385
Mph1103I	ATGCAT	2 cut(s)	237, 338
MunI	CAATTG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	416, 421
NdeI	CATATG	1 cut(s)	231
NdeII	GATC	1 cut(s)	164
NlaIII	CATG	3 cut(s)	209, 340, 371
NlaIV	GGNNCC	1 cut(s)	268
NsbI	TGCGCA	1 cut(s)	20
NsiI	ATGCAT	2 cut(s)	237, 338
NspI	RCATGY	1 cut(s)	371
PaeR7I	CTCGAG	1 cut(s)	389
PagI	TCATGA	1 cut(s)	205
PctI	GAATGC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	422
PspXI	VCTCGAGB	1 cut(s)	389
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	1 cut(s)	164
Sau96I	GGNCC	1 cut(s)	422
SetI	ASST	6 cut(s)	30, 99, 257, 279, 286, 390
SfaNI	GCATC	4 cut(s)	97, 244, 270, 323
Sfr274I	CTCGAG	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	389
SmlI	CTYRAG	2 cut(s)	256, 389
SmoI	CTYRAG	2 cut(s)	256, 389
Sse9I	AATT	4 cut(s)	118, 132, 305, 426
SspMI	CTAG	1 cut(s)	162
TaaI	ACNGT	3 cut(s)	78, 152, 297
TaqI	TCGA	1 cut(s)	390
TasI	AATT	4 cut(s)	118, 132, 305, 426
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	2 cut(s)	87, 147
XapI	RAATTY	1 cut(s)	305
XbaI	TCTAGA	1 cut(s)	161
XceI	RCATGY	1 cut(s)	371
XhoI	CTCGAG	1 cut(s)	389
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	2 cut(s)	237, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.