Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Forward (+)

1733281 .. 1734496

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0021200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAGTTCCGCGTCTACTACTCTAATAAAGATACAACATCACCAATAGTCCGTACTGAAGATGGAGGGAAAGCCAAAAACGCAATAGGTCATGGAATTCCAAGTTGCTTTCTGGACAAGGTGCGTGAAGCTGCAATACAAATCATACAATTCTTTGAACTTCCAGTGGTAGAGAAGCAAAAATACTACAGAGAAATTTCTGGTGGCCGTGAAGGATATGGGGATGATGTCATTATCTCAGGGAAGCAAGTTCTGGATTGGTCAGGAATAAGAGTTCTGTTGCAGGACAAAGAAGTAGAGGGTCTTCAAGTTTTGGTGGATGTTATGAGTTATGGCATATTCAAGGGCCCACTGCACAGGGTGATGAAGCTAGCTGTGACCTTGCTTAATGAACCAGATCCTGATACTGAGATTAGTCCAGTGGAGAAACTGATAGATGAGACAAGGCCAAGGTCATACAAAAATGTCAAAAATTATGGCAATATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

Hpt

Protein Analysis

163

Amino Acids

18.46

Weight (kDa)

6.16

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	29 - 88	2.3e-06	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	1 cut(s)	12
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	1 cut(s)	392
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	96, 195
AcuI	CTGAAG	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	361
AfaI	GTAC	1 cut(s)	55
AgsI	TTSAA	3 cut(s)	158, 308, 343
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	3 cut(s)	131, 370, 374
AluI	AGCT	3 cut(s)	131, 370, 374
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	1 cut(s)	392
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	3 cut(s)	205, 346, 446
ApaI	GGGCCC	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	2 cut(s)	96, 195
AspS9I	GGNCC	2 cut(s)	346, 347
AsuHPI	GGTGA	2 cut(s)	33, 373
AsuNHI	GCTAGC	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	350
BarI	GAAGNNNNNNTAC	6 cut(s)	120, 152, 167, 199, 288, 320
BbsI	GAAGAC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	1 cut(s)	371
BfmI	CTRYAG	1 cut(s)	187
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	346, 347
BmiI	GGNNCC	1 cut(s)	348
BmtI	GCTAGC	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	449
Bse1I	ACTGG	2 cut(s)	164, 419
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	2 cut(s)	229, 325
BseMII	CTCAG	2 cut(s)	252, 399
BseNI	ACTGG	2 cut(s)	164, 419
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	118
BsgI	GTGCAG	1 cut(s)	338
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	3 cut(s)	207, 348, 448
BsmAI	GTCTC	1 cut(s)	434
BsnI	GGCC	3 cut(s)	207, 348, 448
Bsp120I	GGGCCC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp143I	GATC	1 cut(s)	397
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	3 cut(s)	207, 348, 448
BspCNI	CTCAG	2 cut(s)	251, 400
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	348
BspOI	GCTAGC	1 cut(s)	374
BspPI	GGATC	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	164, 419
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	238, 408
BstF5I	GGATG	2 cut(s)	229, 325
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	400
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstSFI	CTRYAG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	350
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	3 cut(s)	207, 348, 448
BtsCI	GGATG	2 cut(s)	229, 325
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	3 cut(s)	171, 350, 426
Cac8I	GCNNGC	1 cut(s)	372
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	346, 347
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	7 cut(s)	74, 131, 207, 348, 370, 374, 448
CviKI_1	RGCY	7 cut(s)	74, 131, 207, 348, 370, 374, 448
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	2 cut(s)	238, 408
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
DraIII	CACNNNGTG	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	1 cut(s)	95
FaiI	YATR	8 cut(s)	93, 146, 219, 326, 333, 338, 457, 477
FatI	CATG	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	2 cut(s)	236, 332
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	207, 348, 448
Hin1II	CATG	1 cut(s)	95
HphI	GGTGA	2 cut(s)	33, 373
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188III	TCNNGA	4 cut(s)	113, 254, 264, 401
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	206
HpyCH4V	TGCA	3 cut(s)	134, 283, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	238, 408
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	397
Lsp1109I	GCAGC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	2 cut(s)	71, 296
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	350
MluCI	AATT	4 cut(s)	96, 149, 195, 472
MnlI	CCTC	2 cut(s)	59, 292
MseI	TTAA	1 cut(s)	387
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	1 cut(s)	397
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	348
PspOMI	GGGCCC	1 cut(s)	346
PspPI	GGNCC	2 cut(s)	346, 347
PstNI	CAGNNNCTG	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	2 cut(s)	346, 347
SduI	GDGCHC	1 cut(s)	350
SetI	ASST	7 cut(s)	91, 123, 133, 372, 376, 383, 455
SfcI	CTRYAG	1 cut(s)	187
Sse9I	AATT	4 cut(s)	96, 149, 195, 472
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	371
StyI	CCWWGG	1 cut(s)	449
TasI	AATT	4 cut(s)	96, 149, 195, 472
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	3 cut(s)	171, 357, 426
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	2 cut(s)	380, 405
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	3 cut(s)	171, 357, 426
XapI	RAATTY	2 cut(s)	96, 195
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.