Rmu_sc0003395.1_g000012

histidine-containing phosphotransfer protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003395.1
Physical Location & Seq
Reverse (-)
60575 .. 61751
1177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003395.1_g000012.1.cds

Sequence Viewer

Length: 396 bp
atgaggcagtccctctttactcagggatatctggatgaacagtttgttcagttggaggagctgcaagatgatactaatccaaattttgtggaggaaattgctacattgtactaccgtgattcatgcagatcactccaaaccatagagaagtcattagagaaaacccctcacgatttcaataagttggacaatcatatgcatcaattcaagggaagtagctcaagcatcggagccaagaaggtgaaagctgaatgccaacagttcagagaatattgtagggcaggaaatggagaaggatgcatgagaactttccaactattgaagaaagaacatgcaactctgaaaaagaagcttgaggcttattttcaggtgataatcgacgcctctcaactttag

Protein Analysis

131

Amino Acids

15.26

Weight (kDa)

6.42

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 1 cut(s) 110
AgsI TTSAA 3 cut(s) 178, 208, 322
AluBI AGCT 4 cut(s) 61, 219, 248, 352
AluI AGCT 4 cut(s) 61, 219, 248, 352
ApeKI GCWGC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 82
AsuHPI GGTGA 2 cut(s) 253, 382
BbvI GCAGC 1 cut(s) 48
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 232
BmsI GCATC 3 cut(s) 208, 234, 287
BpuEI CTTGAG 2 cut(s) 205, 374
BsaBI GATNNNNATC 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 381
Bse8I GATNNNNATC 1 cut(s) 75
BseGI GGATG 2 cut(s) 40, 302
BseJI GATNNNNATC 1 cut(s) 75
BseMII CTCAG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 48
BsmI GAATGC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 232
BssMI GATC 1 cut(s) 128
BssNI GRCGYC 1 cut(s) 381
Bst4CI ACNGT 3 cut(s) 42, 116, 261
BstACI GRCGYC 1 cut(s) 381
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 2 cut(s) 40, 302
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 48
BtsCI GGATG 2 cut(s) 40, 302
CseI GACGC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 109
CspCI CAANNNNNGTGG 2 cut(s) 69, 104
CviAII CATG 3 cut(s) 123, 301, 332
CviJI RGCY 6 cut(s) 61, 219, 233, 248, 352, 359
CviKI_1 RGCY 6 cut(s) 61, 219, 233, 248, 352, 359
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
Eco32I GATATC 1 cut(s) 29
EcoRV GATATC 1 cut(s) 29
EcoT22I ATGCAT 2 cut(s) 201, 302
FaeI CATG 3 cut(s) 126, 304, 335
FaiI YATR 6 cut(s) 124, 143, 195, 197, 302, 333
FatI CATG 3 cut(s) 122, 300, 331
FauNDI CATATG 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 2 cut(s) 47, 309
Fsp4HI GCNGC 1 cut(s) 62
GluI GCNGC 1 cut(s) 62
HgaI GACGC 1 cut(s) 389
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 3 cut(s) 126, 304, 335
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 1 cut(s) 119
HphI GGTGA 2 cut(s) 253, 382
Hpy188I TCNGA 3 cut(s) 230, 266, 342
Hpy188III TCNNGA 2 cut(s) 32, 170
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 2 cut(s) 232, 287
HpyCH4III ACNGT 3 cut(s) 42, 116, 261
HpyCH4V TGCA 5 cut(s) 64, 126, 199, 300, 335
HpyF3I CTNAG 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 3 cut(s) 126, 304, 335
Kzo9I GATC 1 cut(s) 128
LmnI GCTCC 2 cut(s) 58, 230
LpnPI CCDG 4 cut(s) 8, 17, 267, 353
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 3 cut(s) 208, 234, 287
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 1 cut(s) 334
MluCI AATT 3 cut(s) 82, 96, 203
MmeI TCCRAC 3 cut(s) 33, 165, 337
MnlI CCTC 6 cut(s) 23, 49, 85, 177, 349, 394
Mph1103I ATGCAT 2 cut(s) 201, 302
Mva1269I GAATGC 1 cut(s) 257
NdeI CATATG 1 cut(s) 195
NdeII GATC 1 cut(s) 128
NlaIII CATG 3 cut(s) 126, 304, 335
NlaIV GGNNCC 1 cut(s) 232
NsiI ATGCAT 2 cut(s) 201, 302
NspI RCATGY 1 cut(s) 335
PctI GAATGC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 232
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 1 cut(s) 128
SetI ASST 6 cut(s) 63, 221, 243, 250, 354, 372
SfaNI GCATC 3 cut(s) 208, 234, 287
SmlI CTYRAG 2 cut(s) 220, 353
SmoI CTYRAG 2 cut(s) 220, 353
Sse9I AATT 3 cut(s) 82, 96, 203
SspI AATATT 1 cut(s) 272
TaaI ACNGT 3 cut(s) 42, 116, 261
TaqI TCGA 1 cut(s) 378
TasI AATT 3 cut(s) 82, 96, 203
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 1 cut(s) 119
TseI GCWGC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 51, 111
XapI RAATTY 1 cut(s) 82
XceI RCATGY 1 cut(s) 335
Zsp2I ATGCAT 2 cut(s) 201, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.