Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Forward (+)

15559650 .. 15560922

Gene Structure 1273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1195900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTCTGCAGAGATCAAGAAAATGGAGGGCAATTCCTTGCGTGAACAAGTTGCAGCCATGAGGCAATCTCTCTTTGATGAGGAAATTTTGGACAAGCAGTTTGTGCAGATGGAGGAATTGGAAGATGTACACAACCCCAACTTTGCTGAGGAGCTTATGACCTTGTATTTCAGGGACTCCTCCAAACTGTTAGTTTCTGTGGAGAAAGCACTGGAGAGACCCCCGTACGACGCTAACAAACTTGATAAGTTTCTCCACCAGCTCAAAGGTAGCAGCGCCAGCGTTGGAGCTAACAAAGTATGGATTGAGACCAACAAGATGAGGGAGACTCTCAAGGCAGAAGACGTTGAAAGGATCAAGAGTCAGTTCCAGCTGGTTAAAAGGGCGCACAAGACTCTCAAAGGAAAACTGGAACCCTACTTTCATCTGCTGCGACAAGCCGGACCTGCAGATGCTGCTCAGCCCCCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

158

Amino Acids

18.06

Weight (kDa)

6.13

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	51 - 100	2.7e-07	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	84
AfaI	GTAC	2 cut(s)	129, 227
AgsI	TTSAA	1 cut(s)	350
AluBI	AGCT	4 cut(s)	154, 262, 290, 373
AluI	AGCT	4 cut(s)	154, 262, 290, 373
Alw26I	GTCTC	3 cut(s)	211, 302, 320
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	455
ApeKI	GCWGC	4 cut(s)	53, 273, 430, 455
ApoI	RAATTY	1 cut(s)	84
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AspLEI	GCGC	2 cut(s)	278, 388
AspS9I	GGNCC	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	348
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	4 cut(s)	65, 285, 417, 442
BccI	CCATC	1 cut(s)	103
BcoDI	GTCTC	3 cut(s)	211, 302, 320
BfmI	CTRYAG	2 cut(s)	6, 447
BfoI	RGCGCY	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	454
BisI	GCNGC	4 cut(s)	54, 274, 431, 456
BlpI	GCTNAGC	1 cut(s)	459
BlsI	GCNGC	4 cut(s)	55, 275, 432, 457
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	414
BmsI	GCATC	1 cut(s)	442
BpiI	GAAGAC	1 cut(s)	348
BplI	GAGNNNNNCTC	4 cut(s)	52, 84, 313, 345
BpmI	CTGGAG	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	147
Bpu1102I	GCTNAGC	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	317
BsaI	GGTCTC	2 cut(s)	211, 302
Bse1I	ACTGG	2 cut(s)	216, 414
BseMII	CTCAG	2 cut(s)	138, 473
BseNI	ACTGG	2 cut(s)	216, 414
BseRI	GAGGAG	2 cut(s)	164, 169
BseXI	GCAGC	4 cut(s)	65, 285, 417, 442
BsgI	GTGCAG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	441
BsiWI	CGTACG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	188
BsmAI	GTCTC	3 cut(s)	211, 302, 320
BsmFI	GGGAC	1 cut(s)	188
Bso31I	GGTCTC	2 cut(s)	211, 302
Bsp1407I	TGTACA	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	12, 354
Bsp1720I	GCTNAGC	1 cut(s)	459
BspCNI	CTCAG	2 cut(s)	139, 472
BspLI	GGNNCC	1 cut(s)	414
BspMAI	CTGCAG	2 cut(s)	10, 451
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	362
BspTNI	GGTCTC	2 cut(s)	211, 302
BsrGI	TGTACA	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	216, 414
BssMI	GATC	2 cut(s)	12, 354
Bst4CI	ACNGT	1 cut(s)	189
BstAPI	GCANNNNNTGC	2 cut(s)	103, 455
BstAUI	TGTACA	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	147, 459
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	2 cut(s)	278, 388
BstKTI	GATC	2 cut(s)	15, 357
BstMAI	GTCTC	3 cut(s)	211, 302, 320
BstMBI	GATC	2 cut(s)	12, 354
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 279, 446, 455
BstSFI	CTRYAG	2 cut(s)	6, 447
BstV1I	GCAGC	4 cut(s)	65, 285, 417, 442
BstV2I	GAAGAC	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	209
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	280
CaiI	CAGNNNCTG	1 cut(s)	455
CfoI	GCGC	2 cut(s)	278, 388
Cfr13I	GGNCC	1 cut(s)	443
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	128, 226
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	7 cut(s)	56, 154, 262, 290, 373, 440, 463
CviKI_1	RGCY	7 cut(s)	56, 154, 262, 290, 373, 440, 463
CviQI	GTAC	2 cut(s)	128, 226
DdeI	CTNAG	2 cut(s)	147, 459
DpnI	GATC	2 cut(s)	14, 356
DpnII	GATC	2 cut(s)	12, 354
Eco31I	GGTCTC	2 cut(s)	211, 302
Eco47I	GGWCC	1 cut(s)	443
FaeI	CATG	1 cut(s)	61
FaiI	YATR	3 cut(s)	59, 158, 301
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	4 cut(s)	54, 274, 431, 456
Fsp4HI	GCNGC	4 cut(s)	54, 274, 431, 456
GlaI	GCGC	2 cut(s)	277, 387
GluI	GCNGC	4 cut(s)	54, 274, 431, 456
GsuI	CTGGAG	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	279
HapII	CCGG	1 cut(s)	441
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	2 cut(s)	278, 388
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	2 cut(s)	276, 386
HinP1I	GCGC	2 cut(s)	276, 386
HinfI	GANTC	4 cut(s)	176, 328, 361, 394
HpaII	CCGG	1 cut(s)	441
Hpy166II	GTNNAC	2 cut(s)	44, 130
Hpy188III	TCNNGA	2 cut(s)	16, 358
Hpy8I	GTNNAC	2 cut(s)	44, 130
Hpy99I	CGWCG	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	4 cut(s)	8, 53, 106, 449
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 279, 446, 455
HpyF3I	CTNAG	2 cut(s)	147, 459
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	2 cut(s)	276, 386
Kzo9I	GATC	2 cut(s)	12, 354
LmnI	GCTCC	2 cut(s)	151, 287
LpnPI	CCDG	9 cut(s)	157, 197, 272, 292, 359, 383, 395, 454, 459
Lsp1109I	GCAGC	4 cut(s)	65, 285, 417, 442
LweI	GCATC	1 cut(s)	442
MaeII	ACGT	1 cut(s)	345
MalI	GATC	2 cut(s)	14, 356
MboI	GATC	2 cut(s)	12, 354
MboII	GAAGA	2 cut(s)	134, 353
MluCI	AATT	3 cut(s)	31, 84, 116
MlyI	GAGTC	4 cut(s)	170, 322, 370, 388
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	7 cut(s)	19, 54, 73, 106, 142, 190, 315
MseI	TTAA	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	4 cut(s)	103, 279, 446, 455
NdeII	GATC	2 cut(s)	12, 354
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	414
Pfl23II	CGTACG	1 cut(s)	225
PkrI	GCNGC	4 cut(s)	55, 275, 432, 457
PleI	GAGTC	4 cut(s)	170, 322, 369, 388
PpsI	GAGTC	4 cut(s)	170, 322, 369, 388
PspLI	CGTACG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	443
PstI	CTGCAG	2 cut(s)	10, 451
PstNI	CAGNNNCTG	1 cut(s)	455
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	2 cut(s)	129, 227
RsaNI	GTAC	2 cut(s)	128, 226
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	4 cut(s)	54, 274, 431, 456
Sau3AI	GATC	2 cut(s)	12, 354
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	4 cut(s)	170, 322, 370, 388
SetI	ASST	8 cut(s)	156, 164, 264, 271, 292, 348, 375, 448
SfaNI	GCATC	1 cut(s)	442
SfcI	CTRYAG	2 cut(s)	6, 447
SinI	GGWCC	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	31, 84, 116
TaaI	ACNGT	1 cut(s)	189
TaiI	ACGT	1 cut(s)	348
TasI	AATT	3 cut(s)	31, 84, 116
TatI	WGTACW	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	4 cut(s)	53, 273, 430, 455
TspDTI	ATGAA	1 cut(s)	413
TspRI	CASTG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.