Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Reverse (-)

10489435 .. 10493280

Gene Structure 3846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG095100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAAGCCCATGACAAGACAGGAGTATGTTGCATCTTTGAGGAGAAAGGAAACCCCTCATCATTCTTATAATTTGGACAATCATATGCATCAGTTCAAGGGAAGTAGCGCAAGCATCAGAACCAAAAAGGTGAAAGCTGAATGCCAACAGTTCAGGGAATATTGTAGGGCAGGAAATGGAGAATGCACACGAGAGGATCAGAGGATGATTGTTACTGATATTCGATTTAGAACAAATCTCCTGAACAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

84

Amino Acids

10.06

Weight (kDa)

10.03

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	8 - 68	1.1e-06	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
AclWI	GGATC	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	97
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
AlwI	GGATC	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	142
BauI	CACGAG	1 cut(s)	189
BmsI	GCATC	3 cut(s)	41, 97, 123
BseGI	GGATG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	55
BsmI	GAATGC	2 cut(s)	146, 188
Bsp143I	GATC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	204
BssMI	GATC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	112
CfoI	GCGC	1 cut(s)	110
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	2 cut(s)	7, 137
CviKI_1	RGCY	2 cut(s)	7, 137
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	90
FaeI	CATG	1 cut(s)	13
FaiI	YATR	5 cut(s)	11, 27, 69, 84, 86
FatI	CATG	1 cut(s)	9
FauNDI	CATATG	1 cut(s)	84
FokI	GGATG	1 cut(s)	217
GlaI	GCGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	119, 201
Hpy188III	TCNNGA	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	32, 88, 186
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	3 cut(s)	5, 139, 156
LweI	GCATC	3 cut(s)	41, 97, 123
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MluCI	AATT	1 cut(s)	70
MnlI	CCTC	4 cut(s)	33, 66, 187, 195
Mph1103I	ATGCAT	1 cut(s)	90
Mva1269I	GAATGC	2 cut(s)	146, 188
NdeI	CATATG	1 cut(s)	84
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	13
NsiI	ATGCAT	1 cut(s)	90
PctI	GAATGC	2 cut(s)	146, 188
PsiI	TTATAA	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	196
SetI	ASST	2 cut(s)	132, 139
SfaNI	GCATC	3 cut(s)	41, 97, 123
SgeI	CNNG	9 cut(s)	22, 27, 32, 109, 123, 166, 183, 201, 203
Sse9I	AATT	1 cut(s)	70
SspI	AATATT	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	223
TasI	AATT	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.