Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001440

Physical Location & Seq

Genomic Coordinates Forward (+)

64195776 .. 64197242

Gene Structure 1467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G040380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGACAGAAACCAGTTGCGACGCCAGGTTGCCCACATGAGAAGTTCTCTCATTGAGCAGGTTCATCATTATTCATTACTTGGATCAGCAGCAATTTGTCCAGCTGGAGATTTGGAAGACGATAGTAACCCAAACTTTGTGGAGGAAATTGTGACATTGTTCTACAAAGACTCATCTAGACTCTTCCAAAAGATTGATCAAGCACTGCATAGTGTACCGATGGATTTTGCCAAGCTGGATGATTACATGCACCAGTTCAAGGGTAGTAGCTCAAGCATTGGAGCTATAAAGGTGAAGAACGAATGCACACAATTCAAAGAATTTTGTCTGGCAGGAAATGCTGAAGGATGCTTCAGGGCTTTCCAGAGAGTGAAACATGAGCATGAGGCATTGAAGAGGCAGCTTGAAACTTATTTCCAGTTGAGAAGACAAGCTGGAATGGCACAAAGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035556 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

151

Amino Acids

17.37

Weight (kDa)

7.74

Isoelectric Point (pI)

59.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	49 - 133	2.6e-11	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16360 AT3G16360
fragaria_vesca	FvH4_1g06050 FvH4_2g35290 FvH4_6g32380 FvH4_6g32380
malus_domestica	MD02G1065100.v1.1 MD08G1111300.v1.1 MD09G1203100.v1.1 MD12G1046900.v1.1 MD15G1090700.v1.1 MD15G1195900.v1.1
prunus_persica	Prupe.1G178800_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.1G445100_v2.0.a1 Prupe.3G059200_v2.0.a1 Prupe.7G220400_v2.0.a1
pyrus_communis	pycom08g09240 pycom15g08460 pycom15g17520
rosa_chinensis	RchiOBHm_Chr2g0091811 RchiOBHm_Chr2g0140511 RchiOBHm_Chr5g0072591 RchiOBHm_Chr6g0306621
rosa_laevigata	RLG00000010779 RLG00000016253 RLG00000019873 RLG00000030136
rosa_multiflora	Rmu_sc0002490.1_g000011 Rmu_sc0003395.1_g000012
rosa_roxburghii	Rroxscaffold_153G00436670 Rroxscaffold_2G00104740 Rroxscaffold_2G00149720 Rroxscaffold_7G00161600
rosa_rugosa	Rorug02G0021200 Rorug02G0363400 Rorug06G0351100
rosa_samantha	Rh2AG065800 Rh2AG414000 Rh2AG598900 Rh2BG065300 Rh2BG424100 Rh2CG066700 Rh2DG064900 Rh2DG433800 Rh6AG463400 Rh6CG095100 Rh6CG182100
rosa_wichuraiana	Rw2G005490 Rw2G033910 Rw6G040380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	49
AclWI	GGATC	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	2 cut(s)	337, 363
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	4 cut(s)	259, 316, 394, 407
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	6 cut(s)	104, 235, 270, 284, 403, 434
AluI	AGCT	6 cut(s)	104, 235, 270, 284, 403, 434
AlwI	GGATC	1 cut(s)	91
ApeKI	GCWGC	2 cut(s)	89, 400
ApoI	RAATTY	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	304
BbsI	GAAGAC	2 cut(s)	123, 433
BbvI	GCAGC	2 cut(s)	101, 412
BccI	CCATC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	26
BclI	TGATCA	1 cut(s)	196
BfaI	CTAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	49
BisI	GCNGC	2 cut(s)	90, 401
BlsI	GCNGC	2 cut(s)	91, 402
Bme1390I	CCNGG	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	338
BpiI	GAAGAC	2 cut(s)	123, 433
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
BpmI	CTGGAG	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	256
BsaHI	GRCGYC	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	3 cut(s)	13, 253, 418
BseBI	CCWGG	1 cut(s)	26
BseGI	GGATG	2 cut(s)	244, 353
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseNI	ACTGG	3 cut(s)	13, 253, 418
BseXI	GCAGC	2 cut(s)	101, 412
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	308
Bsp143I	GATC	2 cut(s)	83, 196
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	91
BsrI	ACTGG	3 cut(s)	13, 253, 418
BssMI	GATC	2 cut(s)	83, 196
BssNI	GRCGYC	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	26
Bst6I	CTCTTC	2 cut(s)	188, 389
BstACI	GRCGYC	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstF5I	GGATG	2 cut(s)	244, 353
BstKTI	GATC	2 cut(s)	86, 199
BstMBI	GATC	2 cut(s)	83, 196
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 440
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	101, 412
BstV2I	GAAGAC	2 cut(s)	123, 433
BtsCI	GGATG	2 cut(s)	244, 353
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	203
BveI	ACCTGC	1 cut(s)	49
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	215
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviAII	CATG	4 cut(s)	37, 247, 377, 383
CviJI	RGCY	7 cut(s)	104, 235, 270, 284, 359, 403, 434
CviKI_1	RGCY	7 cut(s)	104, 235, 270, 284, 359, 403, 434
CviQI	GTAC	1 cut(s)	215
DpnI	GATC	2 cut(s)	85, 198
DpnII	GATC	2 cut(s)	83, 196
Eam1104I	CTCTTC	2 cut(s)	188, 389
EarI	CTCTTC	2 cut(s)	188, 389
Eco57I	CTGAAG	2 cut(s)	337, 363
EcoRII	CCWGG	1 cut(s)	24
FaeI	CATG	4 cut(s)	40, 250, 380, 386
FaiI	YATR	6 cut(s)	38, 210, 248, 287, 378, 384
FatI	CATG	4 cut(s)	36, 246, 376, 382
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	90, 401
FokI	GGATG	2 cut(s)	251, 360
Fsp4HI	GCNGC	2 cut(s)	90, 401
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	2 cut(s)	90, 401
GsuI	CTGGAG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	30
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	4 cut(s)	40, 250, 380, 386
HinfI	GANTC	2 cut(s)	170, 180
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188III	TCNNGA	3 cut(s)	177, 364, 453
Hpy8I	GTNNAC	1 cut(s)	215
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	1 cut(s)	338
HpyCH4V	TGCA	3 cut(s)	208, 250, 306
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 440
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	4 cut(s)	40, 250, 380, 386
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	83, 196
LmnI	GCTCC	1 cut(s)	281
Lsp1109I	GCAGC	2 cut(s)	101, 412
LweI	GCATC	1 cut(s)	338
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	125, 151
MalI	GATC	2 cut(s)	85, 198
MboI	GATC	2 cut(s)	83, 196
MboII	GAAGA	5 cut(s)	128, 175, 307, 406, 438
MluCI	AATT	4 cut(s)	93, 147, 311, 320
MlyI	GAGTC	2 cut(s)	164, 174
MnlI	CCTC	3 cut(s)	136, 379, 390
MslI	CAYNNNNRTG	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	338, 440
NdeII	GATC	2 cut(s)	83, 196
NlaIII	CATG	4 cut(s)	40, 250, 380, 386
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	250
PctI	GAATGC	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	91, 402
PleI	GAGTC	2 cut(s)	164, 174
PpsI	GAGTC	2 cut(s)	164, 174
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	381
SatI	GCNGC	2 cut(s)	90, 401
Sau3AI	GATC	2 cut(s)	83, 196
SchI	GAGTC	2 cut(s)	164, 174
ScrFI	CCNGG	1 cut(s)	26
SfaNI	GCATC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	4 cut(s)	93, 147, 311, 320
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	24
TasI	AATT	4 cut(s)	93, 147, 311, 320
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	2 cut(s)	89, 400
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	2 cut(s)	53, 63
TspRI	CASTG	1 cut(s)	210
XapI	RAATTY	1 cut(s)	320
XbaI	TCTAGA	1 cut(s)	176
XceI	RCATGY	1 cut(s)	250
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.